Merge pull request #98 from bioinfodlsu/input

Disable button if computation is ongoing + Revise the code for clearing dcc Store data

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,32 +1,32 @@
----
-name: Bug report
-about: Create a report to help us improve
-title: ''
-labels: 'bug'
-assignees: ''
-
----
-
-**Describe the bug**
-A clear and concise description of what the bug is.
-
-**To reproduce**
-Steps to reproduce the behavior:
-1. Go to '...'
-2. Click on '...'
-3. Scroll down to '...'
-4. See error
-
-**Expected behavior**
-A clear and concise description of what you expected to happen.
-
-**Screenshots**
-If applicable, add screenshots to help explain your problem.
-
-**Platform**
- - OS (Please indicate the version as well): [e.g., Windows 10, Ubuntu Jammy Jellyfish]
- - Browser: [e.g., Chrome, Safari]
- - Browser version: [e.g., 114.0.5735.199. If unspecified, the latest browser version will be assumed]
-
-**Additional context**
-Add any other context about the problem here.
+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: 'bug'
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '...'
+3. Scroll down to '...'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Platform**
+ - OS (Please indicate the version as well): [e.g., Windows 10, Ubuntu Jammy Jellyfish]
+ - Browser: [e.g., Chrome, Safari]
+ - Browser version: [e.g., 114.0.5735.199. If unspecified, the latest browser version will be assumed]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,20 +1,20 @@
----
-name: Feature request
-about: Suggest an idea for this project
-title: ''
-labels: 'enhancement'
-assignees: ''
-
----
-
-**Is your feature request related to a problem? Please describe.**
-A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
-
-**Describe the solution you'd like**
-A clear and concise description of what you want to happen.
-
-**Describe alternatives you've considered**
-A clear and concise description of any alternative solutions or features you've considered.
-
-**Additional context**
-Add any other context or screenshots about the feature request here.
+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: 'enhancement'
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/workflows/check-for-syntax-errors.yml

@@ -1,8 +1,8 @@
-on: [push, pull_request]
-name: Check for syntax errors
-jobs:
-  check-for-syntax-errors:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: cclauss/Find-Python-syntax-errors-action@master
+on: [push, pull_request]
+name: Check for syntax errors
+jobs:
+  check-for-syntax-errors:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: cclauss/Find-Python-syntax-errors-action@master

.github/workflows/delete-package-versions.yml

@@ -1,30 +1,30 @@
-name: Delete package versions
-
-on:
-  workflow_run:
-    workflows: [Create and publish a Docker image]
-    types: [completed]
-    branches: [main]
-
-jobs:
-  delete-versions:
-    runs-on: ubuntu-latest
-    if: ${{ github.event.workflow_run.conclusion == 'success' }}
-
-    steps:
-      - uses: actions/delete-package-versions@v4
-        with: 
-          package-name: 'rice-pilaf/app'
-          package-type: 'container'
-          min-versions-to-keep: 1
-      - uses: actions/delete-package-versions@v4
-        with: 
-          package-name: 'rice-pilaf/workflow'
-          package-type: 'container'
-          min-versions-to-keep: 1
-
-  on-failure:
-    runs-on: ubuntu-latest
-    if: ${{ github.event.workflow_run.conclusion == 'failure' }}
-    steps:
-      - run: echo 'The triggering workflow failed'
+name: Delete package versions
+
+on:
+  workflow_run:
+    workflows: [Create and publish a Docker image]
+    types: [completed]
+    branches: [main]
+
+jobs:
+  delete-versions:
+    runs-on: ubuntu-latest
+    if: ${{ github.event.workflow_run.conclusion == 'success' }}
+
+    steps:
+      - uses: actions/delete-package-versions@v4
+        with: 
+          package-name: 'rice-pilaf/app'
+          package-type: 'container'
+          min-versions-to-keep: 1
+      - uses: actions/delete-package-versions@v4
+        with: 
+          package-name: 'rice-pilaf/workflow'
+          package-type: 'container'
+          min-versions-to-keep: 1
+
+  on-failure:
+    runs-on: ubuntu-latest
+    if: ${{ github.event.workflow_run.conclusion == 'failure' }}
+    steps:
+      - run: echo 'The triggering workflow failed'

.github/workflows/dockerize-and-publish.yml

@@ -1,67 +1,67 @@
-name: Create and publish a Docker image
-
-on:
-  workflow_run:
-    workflows: [Check for syntax errors]
-    types: [completed]
-    branches: [main]
-
-env:
-  REGISTRY: ghcr.io
-  IMAGE_NAME: ${{ github.repository }}
-
-jobs:
-  build-and-push-image:
-    runs-on: ubuntu-latest
-    if: ${{ github.event.workflow_run.conclusion == 'success' }}
-    strategy:
-      fail-fast: false
-      matrix:                                                 # Cannot use env variables inside matrix
-        include:
-          - dockerfile: Dockerfile-app                        # Change to Dockerfile of app
-            image: ghcr.io/bioinfodlsu/rice-pilaf/app         
-          - dockerfile: Dockerfile-workflow                   # Change to Dockerfile of workflow
-            image: ghcr.io/bioinfodlsu/rice-pilaf/workflow    
-    permissions:
-      contents: read
-      packages: write
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v3
-
-      - name: Extract metadata (tags, labels) for Docker
-        id: meta
-        uses: docker/metadata-action@v4
-        with:
-          images: ${{ matrix.image }}
-
-      - name: Set up QEMU
-        uses: docker/setup-qemu-action@v2
-
-      - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
-
-      - name: Log in to the Container registry
-        uses: docker/login-action@v2
-        with:
-          registry: ${{ env.REGISTRY }}
-          username: ${{ github.actor }}
-          password: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Build and push Docker image
-        uses: docker/build-push-action@v3
-        with:
-          context: .
-          cache-from: type=gha
-          cache-to: type=gha, mode=max
-          file: ${{ matrix.dockerfile }}
-          push: true
-          tags: ${{ steps.meta.outputs.tags }}
-          labels: ${{ steps.meta.outputs.labels }}
-
-  on-failure:
-    runs-on: ubuntu-latest
-    if: ${{ github.event.workflow_run.conclusion == 'failure' }}
-    steps:
-      - run: echo 'The triggering workflow failed'
+name: Create and publish a Docker image
+
+on:
+  workflow_run:
+    workflows: [Check for syntax errors]
+    types: [completed]
+    branches: [main]
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+    if: ${{ github.event.workflow_run.conclusion == 'success' }}
+    strategy:
+      fail-fast: false
+      matrix:                                                 # Cannot use env variables inside matrix
+        include:
+          - dockerfile: Dockerfile-app                        # Change to Dockerfile of app
+            image: ghcr.io/bioinfodlsu/rice-pilaf/app         
+          - dockerfile: Dockerfile-workflow                   # Change to Dockerfile of workflow
+            image: ghcr.io/bioinfodlsu/rice-pilaf/workflow    
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v4
+        with:
+          images: ${{ matrix.image }}
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v2
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v3
+        with:
+          context: .
+          cache-from: type=gha
+          cache-to: type=gha, mode=max
+          file: ${{ matrix.dockerfile }}
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+
+  on-failure:
+    runs-on: ubuntu-latest
+    if: ${{ github.event.workflow_run.conclusion == 'failure' }}
+    steps:
+      - run: echo 'The triggering workflow failed'

.github/workflows/mirror-main-to-demo.yml

@@ -1,20 +1,20 @@
-name: Mirror main to demo branch
-
-on:
-  workflow_run:
-    workflows: [Check for syntax errors]
-    types: [completed]
-    branches: [main]
-
-jobs:
-  mirror_job:
-      runs-on: ubuntu-latest
-      name: Mirror main branch to demo branch
-      steps:
-      - name: Mirror action step
-        id: mirror
-        uses: google/[email protected]
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          source: 'main'
-          dest: 'demo'
+name: Mirror main to demo branch
+
+on:
+  workflow_run:
+    workflows: [Check for syntax errors]
+    types: [completed]
+    branches: [main]
+
+jobs:
+  mirror_job:
+      runs-on: ubuntu-latest
+      name: Mirror main branch to demo branch
+      steps:
+      - name: Mirror action step
+        id: mirror
+        uses: google/[email protected]
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          source: 'main'
+          dest: 'demo'