Rename to bioimageio.engine

.github/workflows/build.yml

@@ -28,4 +28,4 @@ jobs:
           python -m pip install --upgrade pip
           python -m pip install -r requirements.txt
       - name: Test server
-        run: python -m bioengine start-server --host=0.0.0.0 --port=9000 & wget http://127.0.0.1:9000/public/services/bioengine
+        run: python -m bioimageio.engine start-server --host=0.0.0.0 --port=9000 & wget http://127.0.0.1:9000/public/services/bioengine

bioengine/__init__.py → bioimageio/engine/__init__.py

@@ -1,5 +1,5 @@
 import asyncio
-from bioengine.app_loader import load_apps
+from bioimageio.engine.app_loader import load_apps
 import logging
 
 logger = logging.getLogger(__name__)

bioengine/__main__.py → bioimageio/engine/__main__.py

@@ -14,12 +14,12 @@ def start_server(args):
         f"--host={args.host}",
         f"--port={args.port}",
         f"--public-base-url={args.public_base_url}",
-        "--startup-functions=bioengine:register_bioengine_apps"
+        "--startup-functions=bioimageio.engine:register_bioengine_apps"
     ]
     subprocess.run(command)
 
 def connect_server(args):
-    from bioengine import connect_server
+    from engine import connect_server
     server_url = args.server_url
     loop = asyncio.get_event_loop()
     loop.create_task(connect_server(server_url))

bioengine/app_loader.py → bioimageio/engine/app_loader.py

@@ -26,7 +26,7 @@ async def run(self, server):
             assert self.entrypoint
 
             file_path = Path(__file__).parent.parent / "apps" / self.id / self.entrypoint
-            module_name = 'bioengine.apps.' + self.id.replace('-', '_')
+            module_name = 'bioimageio.engine.apps.' + self.id.replace('-', '_')
             spec = importlib.util.spec_from_file_location(module_name, file_path)
             module = importlib.util.module_from_spec(spec)
             spec.loader.exec_module(module)

docs/README.md

@@ -13,7 +13,7 @@ BioEngine stands as a beacon for developers and researchers alike, providing an
 ## Installation
 
 ```bash
-pip install bioengine
+pip install bioimageio.engine
 ```
 
 ## Using the BioEngine

pyproject.toml

@@ -2,10 +2,10 @@
 requires = ["setuptools", "wheel"]
 
 [project]
-name = "bioengine"
+name = "bioimageio.engine"
 version = "0.1.0"
 readme = "README.md"
-description = "Hypha Services for the BioEngine"
+description = "BioEngine: Your AI Engine for Advanced BioImage Analysis in Containers"
 dependencies = [
   "imjoy-rpc",
   "PyYAML",
@@ -17,5 +17,5 @@ dependencies = [
 include-package-data = true
 
 [tool.setuptools.packages.find]
-include = ["bioengine*"]
+include = ["bioimageio*"]
 exclude = ["tests*", "scripts*"]