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update to bioconda-utils v3.2.0, remove defaults, switch to .conda package format #54

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merged 3 commits into from
Jun 2, 2024
Merged

update to bioconda-utils v3.2.0, remove defaults, switch to .conda package format #54

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6ba2fb4
Set pkg_format=2 (i.e., build .conda not .tar.bz2)
mbargull May 5, 2024
db24a64
Remove defaults channel
mbargull Jun 2, 2024
acdda2c
update to bioconda-utils v3.2.0
mbargull Jun 2, 2024
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2 changes: 1 addition & 1 deletion common.sh
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
BIOCONDA_UTILS_TAG=v2.15.1
BIOCONDA_UTILS_TAG=v3.2.0
MAMBAFORGE_VER=24.3.0-0
MAMBAFORGE_INSTALLATION_DIR="/opt/mambaforge"
5 changes: 3 additions & 2 deletions configure-conda.sh
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Expand Up @@ -21,11 +21,12 @@ then
fi

conda config --set always_yes yes
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --remove channels defaults || true
conda config --set channel_priority strict
conda config --set conda_build.pkg_format 2

if [ ${BIOCONDA_DISABLE_BUILD_PREP:=0} == 0 ]; then
conda config --add channels "file://${MAMBAFORGE_INSTALLATION_DIR}/conda-bld"
fi
fi
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