Compatibility with NumPy v2

bioFAM · Oct 16, 2024 · cc97fa0 · cc97fa0
1 parent 1581c5c
commit cc97fa0
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Showing 2 changed files with 7 additions and 7 deletions.
diff --git a/mofapy2/build_model/init_model.py b/mofapy2/build_model/init_model.py
@@ -115,7 +115,7 @@ def initZ(
 
                     if impute == True:
                         if np.any(np.isnan(Ytmp)):
-                            imp = SimpleImputer(missing_values=np.NaN, strategy="mean")
+                            imp = SimpleImputer(missing_values=np.nan, strategy="mean")
                             imp.fit(Ytmp)
                             Ytmp = imp.transform(Ytmp)
 
@@ -215,7 +215,7 @@ def initZ_smooth(
 
                     if impute == True:
                         if np.any(np.isnan(Ytmp)):
-                            imp = SimpleImputer(missing_values=np.NaN, strategy="mean")
+                            imp = SimpleImputer(missing_values=np.nan, strategy="mean")
                             imp.fit(Ytmp)
                             Ytmp = imp.transform(Ytmp)
 
@@ -366,7 +366,7 @@ def initZgU(
 
                     if impute == True:
                         if np.any(np.isnan(Ytmp)):
-                            imp = SimpleImputer(missing_values=np.NaN, strategy="mean")
+                            imp = SimpleImputer(missing_values=np.nan, strategy="mean")
                             imp.fit(Ytmp)
                             Ytmp = imp.transform(Ytmp)
 
@@ -516,7 +516,7 @@ def initSZ(
 
                 if impute == True:
                     if np.any(np.isnan(Ytmp)):
-                        imp = SimpleImputer(missing_values=np.NaN, strategy="mean")
+                        imp = SimpleImputer(missing_values=np.nan, strategy="mean")
                         imp.fit(Ytmp)
                         Ytmp = imp.transform(Ytmp)
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "mofapy2"
-version = "0.7.1"
+version = "0.7.2"
 description = "Multi-omics factor analysis"
 authors = ['Ricard Argelaguet', 'Damien Arnol', 'Danila Bredikhin', 'Britta Velten']
 license = "LGPL-3.0"
@@ -14,8 +14,8 @@ homepage = "https:/biofam.github.io/MOFA2/"
 
 [tool.poetry.dependencies]
 python = "^3.8"
-numpy = "^1"
-pandas = "> 1"
+numpy = "*"
+pandas = "*"
 scipy = "~1"
 scikit-learn = "~1"
 h5py = "~3"