fix: None error when no circular contigs passed

bento-platform · Feb 13, 2024 · 452dae4 · 452dae4
1 parent 78d376a
commit 452dae4
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/fasta_checksum_utils/entry.py b/fasta_checksum_utils/entry.py
@@ -24,7 +24,8 @@ async def main():
 
     args = parser.parse_args()
 
-    report = await fasta_report(args.fasta, args.fai, frozenset(args.circular_contigs), (AlgorithmMD5, AlgorithmGA4GH))
+    report = await fasta_report(
+        args.fasta, args.fai, frozenset(args.circular_contigs or set()), (AlgorithmMD5, AlgorithmGA4GH))
     if args.out_format == "bento-json":
         print(report.as_bento_json(genome_id=getattr(args, "genome_id", None)))
     else: