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chore: update base image, dependencies; bump to 0.14.3 #90

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merged 1 commit into from
Aug 12, 2024
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chore: update base image, dependencies; bump to 0.14.3 #90

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2 changes: 1 addition & 1 deletion .github/workflows/build.yml
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Expand Up @@ -22,7 +22,7 @@ jobs:
uses: actions/checkout@v4

- name: Run Bento build action
uses: bento-platform/bento_build_action@v0.11.1
uses: bento-platform/bento_build_action@v1.0.0
with:
registry: ghcr.io
registry-username: ${{ github.actor }}
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x

WORKDIR /

FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.07.09 AS base-deps
FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.08.12 AS base-deps

SHELL ["/bin/bash", "-c"]

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8 changes: 4 additions & 4 deletions container.requirements.txt
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@@ -1,4 +1,4 @@
gunicorn==22.0.0
gevent==23.9.1
pysam>=0.22.0,<0.23.0
fasta-checksum-utils>=0.4.1,<0.5
gunicorn==23.0.0
gevent==24.2.1
pysam>=0.22.1,<0.23.0
fasta-checksum-utils>=0.4.3,<0.5
2 changes: 1 addition & 1 deletion dev.Dockerfile
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Expand Up @@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x

WORKDIR /

FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.07.09 AS base-deps
FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.08.12 AS base-deps

LABEL org.opencontainers.image.description="Local development image for Bento WES."
LABEL devcontainer.metadata='[{ \
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