chore: add WOMtool back to docker image

bento-platform · Mar 11, 2024 · e081ced · e081ced
1 parent 0940908
commit e081ced
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Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -18,12 +18,16 @@ RUN apt-get update -y && \
     cp -r vcf2maf/data /opt/data && \
     rm -rf vcf2maf
 
-# Install Cromwell
+# Install Cromwell + WOMtool
 ENV CROMWELL_VERSION=86
 WORKDIR /
 RUN curl -L \
     https://github.com/broadinstitute/cromwell/releases/download/${CROMWELL_VERSION}/cromwell-${CROMWELL_VERSION}.jar \
-    -o cromwell.jar
+    -o cromwell.jar && \
+    curl -L \
+    https://github.com/broadinstitute/cromwell/releases/download/${CROMWELL_VERSION}/womtool-${CROMWELL_VERSION}.jar \
+    -o womtool.jar
+
 
 # Clone (but don't install yet) Ensembl-VEP
 ENV VEP_ENSEMBL_RELEASE_VERSION=111.0

diff --git a/dev.Dockerfile b/dev.Dockerfile
@@ -27,7 +27,10 @@ WORKDIR /
 ENV CROMWELL_VERSION=86
 RUN curl -L \
     https://github.com/broadinstitute/cromwell/releases/download/${CROMWELL_VERSION}/cromwell-${CROMWELL_VERSION}.jar \
-    -o cromwell.jar
+    -o cromwell.jar && \
+    curl -L \
+    https://github.com/broadinstitute/cromwell/releases/download/${CROMWELL_VERSION}/womtool-${CROMWELL_VERSION}.jar \
+    -o womtool.jar
 
 FROM base-deps AS install