test(workflows): WDL path fetching

tests/test_workflows.py

@@ -1,14 +1,17 @@
 import pytest
+from pathlib import Path
 
 from bento_lib import workflows
 
+WDL_DIR = Path(__file__).parent / "wdls"
+
 
 def test_namespaced_input():
     assert workflows.utils.namespaced_input("workflow1", "input") == "workflow1.input"
 
 
 def test_workflow_set():
-    ws = workflows.workflow_set.WorkflowSet()
+    ws = workflows.workflow_set.WorkflowSet(WDL_DIR)
 
     assert not ws.workflow_exists("test")
     assert ws.get_workflow("test") is None
@@ -28,6 +31,7 @@ def test_workflow_set():
     assert ws.workflow_exists("test")
     assert ws.get_workflow("test") == wd
     assert ws.get_workflow_resource("test") == "test.wdl"
+    assert ws.get_workflow_wdl_path("test") == WDL_DIR / "test.wdl"
 
     assert ws.workflow_dicts_by_type_and_id()["ingestion"]["test"]["name"] == "Test Workflow"
     assert ws.workflow_dicts_by_id()["test"]["name"] == "Test Workflow"
@@ -41,11 +45,13 @@ def test_workflow_set():
         description="A test workflow",
         data_type="experiment",
         tags=["experiment", "cbioportal"],
-        file="test.wdl",
+        file="test2.wdl",
         inputs=[
             workflows.models.WorkflowStringInput(id="input1", type="string"),
         ]
     )
 
     ws.add_workflow("test2", wd2)
     assert ws.workflow_exists("test2")
+
+    assert ws.get_workflow_wdl_path("test3") is None  # no test3 workflow

tests/wdls/test.wdl

@@ -0,0 +1,11 @@
+version 1.0
+
+workflow test {
+    input {
+        File f
+    }
+
+    output {
+        File f_out = f
+    }
+}