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Prevent future bugs that re-introduce silent failure in Coq's CI #2

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Proposing this on the narcissus-release branch because that's the branch where #1 was targeted

`_CoqProject.in` should be using `ML_COMPATIBILITY_FILES_PATTERN`, not
`ML_COMPATIBILITY_FILES`, and the compatibility script uses
`EXTRA_PIPE_SED_FOR_COQPROJECT` to update it.
Fix issue from 842c4c0
We now correctly work on master again
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