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Merge pull request #3 from beharrop/cre_update_v1
Rebase code to maint-1.0 branch with updated machine files
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| #!/bin/bash | ||
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| # Replace all ssh URLs to submodules with HTTP URLs | ||
| sed -i 's/[email protected]:/https:\/\/github.com\//' .gitmodules | ||
| git submodule update --init | ||
| cd components/mpas-source | ||
| sed -i 's/[email protected]:/https:\/\/github.com\//' .gitmodules | ||
| git submodule update --init --recursive |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| version: 2.1 | ||
| jobs: | ||
| build: | ||
| machine: | ||
| image: ubuntu-2004:202010-01 | ||
| steps: | ||
| - checkout | ||
| - run: bash .circleci/setup.sh | ||
| - run: bash .circleci/checkout.sh | ||
| - run: wget https://dabdceba-6d04-11e5-ba46-22000b92c6ec.e.globus.org/containers/public/e3sm.sif | ||
| - run: | ||
| command: singularity exec --hostname singularity e3sm.sif .circleci/run.sh | ||
| no_output_timeout: 60m |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,70 @@ | ||
| #!/bin/bash | ||
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| case="master.A_WCYCL1850.ne4_oQU240.baseline" | ||
| compset="A_WCYCL1850" | ||
| res="ne4_oQU240" | ||
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| log_dir="${HOME}/projects/e3sm/scratch/$case" | ||
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| shopt -s extglob | ||
| shopt -s nullglob | ||
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| function command_yellow | ||
| { | ||
| echo -e "\e[33m\$ $1\e[0m" | ||
| eval $1 | ||
| return $? | ||
| } | ||
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| function command_yellow_rc | ||
| { | ||
| command_yellow "$1" | ||
| rc=$? | ||
| if [ $rc -ne 0 ]; then | ||
| exit $rc | ||
| fi | ||
| } | ||
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| function print_bldlog | ||
| { | ||
| bldlog=$1 | ||
| bldlog_path=(${log_dir}/bld/$bldlog.bldlog.+([[:digit:]])-+([[:digit:]])) | ||
| if [ -n "${bldlog_path}" ]; then | ||
| command_yellow "cat ${bldlog_path}" | ||
| fi | ||
| } | ||
|
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| function print_runlog | ||
| { | ||
| runlog=$1 | ||
| runlog_path=(${log_dir}/run/$runlog.log.+([[:digit:]])-+([[:digit:]])) | ||
| if [ -n "${runlog_path}" ]; then | ||
| command_yellow "cat ${runlog_path}" | ||
| return 1 | ||
| else | ||
| return 0 | ||
| fi | ||
| } | ||
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| command_yellow_rc "mkdir -p $HOME/projects/e3sm/cesm-inputdata" | ||
| command_yellow_rc "cd cime/scripts" | ||
| command_yellow_rc "./create_newcase --case $case --compset $compset --res $res" | ||
| command_yellow_rc "cd $case" | ||
| command_yellow_rc "./xmlchange GMAKE_J=2" | ||
| command_yellow_rc "./case.setup" | ||
| command_yellow "./case.build -v" | ||
| rc=$? | ||
| if [ $rc -ne 0 ]; then | ||
| print_bldlog "e3sm" | ||
| print_bldlog "csm_share" | ||
| print_bldlog "pio" | ||
| print_bldlog "mct" | ||
| print_bldlog "gptl" | ||
| exit $rc | ||
| fi | ||
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| # Unfortunately, case.submit always return 0, even if it fails. | ||
| # To find out if it succeeded, we check if the run log has been gzipped. | ||
| #command_yellow "./case.submit" | ||
| #print_runlog "e3sm" | ||
| #exit $? |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| #!/bin/bash | ||
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| go version | ||
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| # Install Singularity | ||
| export VERSION=3.5.3 && # adjust this as necessary \ | ||
| wget https://github.com/sylabs/singularity/releases/download/v${VERSION}/singularity-${VERSION}.tar.gz && \ | ||
| tar -xzf singularity-${VERSION}.tar.gz && \ | ||
| cd singularity | ||
| ./mconfig && \ | ||
| make -C ./builddir && \ | ||
| sudo make -C ./builddir install | ||
|
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| singularity --version |
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