Merge pull request #160 from piyueh/petsc-3.16

Petsc 3.16 and Docker/Singularity info

CHANGELOG.md

@@ -2,6 +2,24 @@
 
 ---
 
+## 0.5.3
+
+---
+
+### Added
+
+### Changed
+
+* Upgrade PETSc to version 3.16
+* Added information of Docker and Singularity images.
+* Updated dependency information.
+
+### Fixed
+
+### Removed
+
+---
+
 ## 0.5.1
 
 ---

Makefile.in

@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.15 from Makefile.am.
+# Makefile.in generated by automake 1.16.5 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2014 Free Software Foundation, Inc.
+# Copyright (C) 1994-2021 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -144,7 +144,7 @@ am__recursive_targets = \
   $(RECURSIVE_CLEAN_TARGETS) \
   $(am__extra_recursive_targets)
 AM_RECURSIVE_TARGETS = $(am__recursive_targets:-recursive=) TAGS CTAGS \
-	cscope distdir dist dist-all distcheck
+	cscope distdir distdir-am dist dist-all distcheck
 am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
 # Read a list of newline-separated strings from the standard input,
 # and print each of them once, without duplicates.  Input order is
@@ -162,18 +162,15 @@ am__define_uniq_tagged_files = \
   unique=`for i in $$list; do \
     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
   done | $(am__uniquify_input)`
-ETAGS = etags
-CTAGS = ctags
-CSCOPE = cscope
 DIST_SUBDIRS = $(SUBDIRS)
 am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/config/compile \
 	$(top_srcdir)/config/config.guess \
 	$(top_srcdir)/config/config.h.in \
 	$(top_srcdir)/config/config.sub \
 	$(top_srcdir)/config/install-sh $(top_srcdir)/config/ltmain.sh \
-	$(top_srcdir)/config/missing config/ar-lib config/compile \
-	config/config.guess config/config.sub config/install-sh \
-	config/ltmain.sh config/missing
+	$(top_srcdir)/config/missing README.md config/ar-lib \
+	config/compile config/config.guess config/config.sub \
+	config/install-sh config/ltmain.sh config/missing
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 distdir = $(PACKAGE)-$(VERSION)
 top_distdir = $(distdir)
@@ -212,6 +209,8 @@ am__relativize = \
 DIST_ARCHIVES = $(distdir).tar.gz
 GZIP_ENV = --best
 DIST_TARGETS = dist-gzip
+# Exists only to be overridden by the user if desired.
+AM_DISTCHECK_DVI_TARGET = dvi
 distuninstallcheck_listfiles = find . -type f -print
 am__distuninstallcheck_listfiles = $(distuninstallcheck_listfiles) \
   | sed 's|^\./|$(prefix)/|' | grep -v '$(infodir)/dir$$'
@@ -235,6 +234,8 @@ CCDEPMODE = @CCDEPMODE@
 CFLAGS = @CFLAGS@
 CPP = @CPP@
 CPPFLAGS = @CPPFLAGS@
+CSCOPE = @CSCOPE@
+CTAGS = @CTAGS@
 CUDA_CPPFLAGS = @CUDA_CPPFLAGS@
 CUDA_LDFLAGS = @CUDA_LDFLAGS@
 CXX = @CXX@
@@ -251,8 +252,10 @@ ECHO_C = @ECHO_C@
 ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 EGREP = @EGREP@
+ETAGS = @ETAGS@
 EXEEXT = @EXEEXT@
 FGREP = @FGREP@
+FILECMD = @FILECMD@
 GREP = @GREP@
 GTEST_CPPFLAGS = @GTEST_CPPFLAGS@
 GTEST_LDFLAGS = @GTEST_LDFLAGS@
@@ -387,8 +390,8 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 	    echo ' $(SHELL) ./config.status'; \
 	    $(SHELL) ./config.status;; \
 	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__maybe_remake_depfiles);; \
 	esac;
 
 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
@@ -529,8 +532,10 @@ cscopelist-am: $(am__tagged_files)
 distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 	-rm -f cscope.out cscope.in.out cscope.po.out cscope.files
+distdir: $(BUILT_SOURCES)
+	$(MAKE) $(AM_MAKEFLAGS) distdir-am
 
-distdir: $(DISTFILES)
+distdir-am: $(DISTFILES)
 	$(am__remove_distdir)
 	test -d "$(distdir)" || mkdir "$(distdir)"
 	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
@@ -595,7 +600,7 @@ distdir: $(DISTFILES)
 	  ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
 	|| chmod -R a+r "$(distdir)"
 dist-gzip: distdir
-	tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+	tardir=$(distdir) && $(am__tar) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).tar.gz
 	$(am__post_remove_distdir)
 
 dist-bzip2: distdir
@@ -610,6 +615,10 @@ dist-xz: distdir
 	tardir=$(distdir) && $(am__tar) | XZ_OPT=$${XZ_OPT--e} xz -c >$(distdir).tar.xz
 	$(am__post_remove_distdir)
 
+dist-zstd: distdir
+	tardir=$(distdir) && $(am__tar) | zstd -c $${ZSTD_CLEVEL-$${ZSTD_OPT--19}} >$(distdir).tar.zst
+	$(am__post_remove_distdir)
+
 dist-tarZ: distdir
 	@echo WARNING: "Support for distribution archives compressed with" \
 		       "legacy program 'compress' is deprecated." >&2
@@ -621,7 +630,7 @@ dist-shar: distdir
 	@echo WARNING: "Support for shar distribution archives is" \
 	               "deprecated." >&2
 	@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
-	shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
+	shar $(distdir) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).shar.gz
 	$(am__post_remove_distdir)
 
 dist-zip: distdir
@@ -639,7 +648,7 @@ dist dist-all:
 distcheck: dist
 	case '$(DIST_ARCHIVES)' in \
 	*.tar.gz*) \
-	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
+	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).tar.gz | $(am__untar) ;;\
 	*.tar.bz2*) \
 	  bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
 	*.tar.lz*) \
@@ -649,9 +658,11 @@ distcheck: dist
 	*.tar.Z*) \
 	  uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
 	*.shar.gz*) \
-	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
+	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
 	*.zip*) \
 	  unzip $(distdir).zip ;;\
+	*.tar.zst*) \
+	  zstd -dc $(distdir).tar.zst | $(am__untar) ;;\
 	esac
 	chmod -R a-w $(distdir)
 	chmod u+w $(distdir)
@@ -667,7 +678,7 @@ distcheck: dist
 	    $(DISTCHECK_CONFIGURE_FLAGS) \
 	    --srcdir=../.. --prefix="$$dc_install_base" \
 	  && $(MAKE) $(AM_MAKEFLAGS) \
-	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
+	  && $(MAKE) $(AM_MAKEFLAGS) $(AM_DISTCHECK_DVI_TARGET) \
 	  && $(MAKE) $(AM_MAKEFLAGS) check \
 	  && $(MAKE) $(AM_MAKEFLAGS) install \
 	  && $(MAKE) $(AM_MAKEFLAGS) installcheck \
@@ -831,18 +842,18 @@ uninstall-am:
 	am--refresh check check-am clean clean-cscope clean-generic \
 	clean-libtool cscope cscopelist-am ctags ctags-am dist \
 	dist-all dist-bzip2 dist-gzip dist-lzip dist-shar dist-tarZ \
-	dist-xz dist-zip distcheck distclean distclean-generic \
-	distclean-hdr distclean-libtool distclean-tags distcleancheck \
-	distdir distuninstallcheck dvi dvi-am html html-am info \
-	info-am install install-am install-data install-data-am \
-	install-data-hook install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs installdirs-am maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic \
-	mostlyclean-libtool pdf pdf-am ps ps-am tags tags-am uninstall \
-	uninstall-am
+	dist-xz dist-zip dist-zstd distcheck distclean \
+	distclean-generic distclean-hdr distclean-libtool \
+	distclean-tags distcleancheck distdir distuninstallcheck dvi \
+	dvi-am html html-am info info-am install install-am \
+	install-data install-data-am install-data-hook install-dvi \
+	install-dvi-am install-exec install-exec-am install-html \
+	install-html-am install-info install-info-am install-man \
+	install-pdf install-pdf-am install-ps install-ps-am \
+	install-strip installcheck installcheck-am installdirs \
+	installdirs-am maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-generic mostlyclean-libtool pdf pdf-am \
+	ps ps-am tags tags-am uninstall uninstall-am
 
 .PRECIOUS: Makefile