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chore: update smithyVersion and smithy hash (#5543)
* chore: upgrade smithyVersion=1.41.1 * chore: update smithy hash * chore: cherry-pick from syall * chore: code generation sync * chore: update package dependency versions to follow clients * chore: update yarn lock * chore: restore s3 codegen from main branch * chore: sync codegen * chore: avoid octal 0 in protocol test * chore: codegen sync * chore: update yarn lock and package dependency versions * chore: skip defaults protocol tests * chore: skip pending protocol test
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