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Explain error with clusters
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Signed-off-by: Sean Smith <[email protected]>
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sean-smith committed May 29, 2022
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9 changes: 9 additions & 0 deletions content/04-container-parallelcluster/04-launch-nextflow.md
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Expand Up @@ -94,5 +94,14 @@ The output of the job will be in the `nextflow_[SLURM_JOB_ID].out` file and simi
![Singularity run](/images/container-pc/singularity_nextflow.png)


{{% notice warning %}}
There was a previous error with this tutorial that had the wrong github url
`https://github.com/aws-samples/aws-hpc-tutorials/blob/isc22/static/scripts/post-install/container-install.sh`
This was resolved in [#260](https://github.com/aws-samples/aws-hpc-tutorials/pull/260).
If you hit this error you can debug it by looking at the **Logs** tab and looking at the **cloud-init-output** log of one of the compute nodes like so:
![Logs Tab](/images/container-pc/pcm-logs.png)
To resolve this, update the cluster to use the url `https://raw.githubusercontent.com/aws-samples/aws-hpc-tutorials/isc22/static/scripts/post-install/container-install.sh`
{{% /notice %}}

You have now run a basic genomics pipeline and you won't need the cluster in the next labs.
The next section will go over how to delete your HPC Cluster.
Binary file added static/images/container-pc/pcm-logs.png
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