This repository contains the following current tutorials:
| Name | Description |
|---|---|
| Intro to Linux | Gentle introduction for Linux Beginners |
| Digital Ocean VMs and SSH Keys | Learn how to create and secure a cheap VM in the cloud |
| Docker | Downloading and launching a docker file |
| Assembly | Basic genome assembly tutorial |
| Gene Prediction | Predicting ORFs from metagenome assemblies |
| 16S Read Extraction | Identify 16S containing reads in metagenome |
| Basic Qiime Tutorial | Generate Phylogenetic Breakdown from 16S Amlicon data |
| QC of Meta/Genome Data | QC filter Genome and Metagenome Data |
| [Functional Gene Detection](08_GENE _FREQUENCY.md) | Determine Frequence of Functional Gene in Metagenome |
| 16S Analysis of Metagenome | Classify 16S reads in Metagenome |
| Creating a Custom Docker | Creating your own Docker files |
| KEGG annotation of Protein Sequences | Conducting KEGG annotation of predicted AA sequences |
| Removing chimeras and mtRNA | Removing contaminaing sequences from amplicon data |
| Draft Genome Completeness | Genome Completeness with single copy marker genes |
In the summer of 2015, we'll meet Friday mornings in the 311 GLC. The Fall 2015 schedule is being scheduled now. Please let Boris know if you are willing to present -- 30-45 minutes would be great. All topics that relate are welcome.
We encourage input and collaboration from anyone interested. If you're familar with GitHub, feel free to submit a pull request if you'd like to contribute. If you'd like to report a bug or make a suggestion, please create a GitHub issue; issues are a usually a good place to ask public questions too. Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.