CI #1140
Annotations
8 errors, 6 warnings, and 1 notice
Documentation:
../../../.julia/packages/DocumenterInterLinks/XD21f/src/interlinks.jl#L238
Could not load inventory "NCDatasets" from any available sources.
sources = ("https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv",)
|
Documentation:
src/inference_data.jl#L289
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:289-317
```jldoctest cat
julia> coords = (; a_dim=["x", "y", "z"]);
julia> dims = dims=(; a=[:a_dim]);
julia> data = Dict(:a => randn(100, 4, 3), :b => randn(100, 4));
julia> idata = from_dict(data; coords=coords, dims=dims)
InferenceData with groups:
> posterior
julia> idata_cat1 = cat(idata, idata; dims=:chain)
InferenceData with groups:
> posterior
julia> idata_cat1.posterior
╭─────────────────╮
│ 100×8×3 Dataset │
├─────────────────┴──────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered
├──────────────────────────────────────────────────── layers ┤
:a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3
:b eltype: Float64 dims: draw, chain size: 100×8
├────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
```
Subexpression:
idata_cat1.posterior
Evaluated output:
┌ 100×8×3 Dataset ┐
├─────────────────┴──────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered
├──────────────────────────────────────────────────── layers ┤
:a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3
:b eltype: Float64 dims: draw, chain size: 100×8
├────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2025-01-17T00:54:13.817"
Expected output:
╭─────────────────╮
│ 100×8×3 Dataset │
├─────────────────┴──────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered
├──────────────────────────────────────────────────── layers ┤
:a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3
:b eltype: Float64 dims: draw, chain size: 100×8
├────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
diff =
Warning: Diff output requires color.
╭─────────────────╮
│ ┌ 100×8×3 Dataset │
┐
├─────────────────┴──────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered
├──────────────────────────────────────────────────── layers ┤
:a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3
:b eltype: Float64 dims: draw, chain size: 100×8
├────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
|
Documentation:
src/inference_data.jl#L321
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:321-340
```jldoctest cat
julia> idata_cat2 = cat(idata, idata; dims=:run)
InferenceData with groups:
> posterior
julia> idata_cat2.posterior
╭───────────────────╮
│ 100×4×3×2 Dataset │
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
```
Subexpression:
idata_cat2.posterior
Evaluated output:
┌ 100×4×3×2 Dataset ┐
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2025-01-17T00:54:13.817"
Expected output:
╭───────────────────╮
│ 100×4×3×2 Dataset │
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
diff =
Warning: Diff output requires color.
╭───────────────────╮
│ ┌ 100×4×3×2 Dataset │
┐
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
|
Documentation:
src/inference_data.jl#L346
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:346-384
```jldoctest cat
julia> observed_data = Dict(:y => randn(10));
julia> idata2 = from_dict(data; observed_data=observed_data, coords=coords, dims=dims)
InferenceData with groups:
> posterior
> observed_data
julia> idata_cat3 = cat(idata, idata2; groups=(:posterior,), dims=:run)
InferenceData with groups:
> posterior
> observed_data
julia> idata_cat3.posterior
╭───────────────────╮
│ 100×4×3×2 Dataset │
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
julia> idata_cat3.observed_data
╭────────────────────╮
│ 10-element Dataset │
├────────────── dims ┤
↓ y_dim_1
├────────────────────┴─────────────── layers ┐
:y eltype: Float64 dims: y_dim_1 size: 10
├────────────────────────────────────────────┴ metadata ┐
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:53.539"
```
Subexpression:
idata_cat3.posterior
Evaluated output:
┌ 100×4×3×2 Dataset ┐
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2025-01-17T00:54:13.817"
Expected output:
╭───────────────────╮
│ 100×4×3×2 Dataset │
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
diff =
Warning: Diff output requires color.
╭───────────────────╮
│ ┌ 100×4×3×2 Dataset │
┐
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
|
Documentation:
src/inference_data.jl#L346
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:346-384
```jldoctest cat
julia> observed_data = Dict(:y => randn(10));
julia> idata2 = from_dict(data; observed_data=observed_data, coords=coords, dims=dims)
InferenceData with groups:
> posterior
> observed_data
julia> idata_cat3 = cat(idata, idata2; groups=(:posterior,), dims=:run)
InferenceData with groups:
> posterior
> observed_data
julia> idata_cat3.posterior
╭───────────────────╮
│ 100×4×3×2 Dataset │
├───────────────────┴─────────────────────────────────── dims ┐
↓ draw ,
→ chain,
↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered,
⬔ run
├─────────────────────────────────────────────────────────────┴ layers ┐
:a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2
:b eltype: Float64 dims: draw, chain, run size: 100×4×2
├──────────────────────────────────────────────────────────── metadata ┤
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:48.434"
julia> idata_cat3.observed_data
╭────────────────────╮
│ 10-element Dataset │
├────────────── dims ┤
↓ y_dim_1
├────────────────────┴─────────────── layers ┐
:y eltype: Float64 dims: y_dim_1 size: 10
├────────────────────────────────────────────┴ metadata ┐
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:53.539"
```
Subexpression:
idata_cat3.observed_data
Evaluated output:
┌ 10-element Dataset ┐
├────────────── dims ┤
↓ y_dim_1
├────────────────────┴─────────────── layers ┐
:y eltype: Float64 dims: y_dim_1 size: 10
├────────────────────────────────────────────┴ metadata ┐
Dict{String, Any} with 1 entry:
"created_at" => "2025-01-17T00:54:18.877"
Expected output:
╭────────────────────╮
│ 10-element Dataset │
├────────────── dims ┤
↓ y_dim_1
├────────────────────┴─────────────── layers ┐
:y eltype: Float64 dims: y_dim_1 size: 10
├────────────────────────────────────────────┴ metadata ┐
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:53.539"
diff =
Warning: Diff output requires color.
╭────────────────────╮
│ ┌ 10-element Dataset │
┐
├────────────── dims ┤
↓ y_dim_1
├────────────────────┴─────────────── layers ┐
:y eltype: Float64 dims: y_dim_1 size: 10
├────────────────────────────────────────────┴ metadata ┐
Dict{String, Any} with 1 entry:
"created_at" => "2024-03-11T14:10:53.539""2025-01-17T00:54:18.877"
|
Documentation:
ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl#L21
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl:21-42
```jldoctest
julia> using ArviZExampleData, PosteriorStats
julia> idata = load_example_data("centered_eight");
julia> loo_result = loo(idata; var_name=:obs);
julia> loo_pit(idata, loo_result.psis_result.log_weights; y_name=:obs)
╭────────────────────────────────────────────╮
│ 8-element DimArray{Float64, 1} loo_pit_obs │
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
```
Subexpression:
loo_pit(idata, loo_result.psis_result.log_weights; y_name=:obs)
Evaluated output:
┌ 8-element DimArray{Float64, 1} loo_pit_obs ┐
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
Expected output:
╭────────────────────────────────────────────╮
│ 8-element DimArray{Float64, 1} loo_pit_obs │
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
diff =
Warning: Diff output requires color.
╭────────────────────────────────────────────╮
│ ┌ 8-element DimArray{Float64, 1} loo_pit_obs │
┐
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
|
Documentation:
ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl#L83
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl:83-102
```jldoctest
julia> using ArviZExampleData, PosteriorStats
julia> idata = load_example_data("centered_eight");
julia> loo_pit(idata; y_name=:obs)
╭────────────────────────────────────────────╮
│ 8-element DimArray{Float64, 1} loo_pit_obs │
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
```
Subexpression:
loo_pit(idata; y_name=:obs)
Evaluated output:
┌ 8-element DimArray{Float64, 1} loo_pit_obs ┐
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
Expected output:
╭────────────────────────────────────────────╮
│ 8-element DimArray{Float64, 1} loo_pit_obs │
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
diff =
Warning: Diff output requires color.
╭────────────────────────────────────────────╮
│ ┌ 8-element DimArray{Float64, 1} loo_pit_obs │
┐
├────────────────────────────────────────────┴─────────────────────────── dims ┐
↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered
└──────────────────────────────────────────────────────────────────────────────┘
"Choate" 0.943511
"Deerfield" 0.63797
"Phillips Andover" 0.316697
"Phillips Exeter" 0.582252
"Hotchkiss" 0.295321
"Lawrenceville" 0.403318
"St. Paul's" 0.902508
"Mt. Hermon" 0.655275
|
Documentation
Process completed with exit code 1.
|
Documentation:
../../../.julia/packages/DocumenterInterLinks/XD21f/src/interlinks.jl#L233
Failed to load inventory "NCDatasets" from possible source "https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv".
exception = RequestError: HTTP/2 404 while requesting https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv
|
Downgrade / Julia 1.9 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Julia 1.9 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Julia pre - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Julia 1 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Julia 1 - macOS-latest - x64 - schedule
[setup-julia] x64 arch has been requested on a macOS runner that has an arm64 (Apple Silicon) architecture. You may have meant to use the "aarch64" arch instead (or left it unspecified for the correct default).
|
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`
|