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CI #1140

Triggered via schedule January 17, 2025 00:50
Status Failure
Total duration 10m 30s
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8 errors, 6 warnings, and 1 notice
Documentation: ../../../.julia/packages/DocumenterInterLinks/XD21f/src/interlinks.jl#L238
Could not load inventory "NCDatasets" from any available sources. sources = ("https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv",)
Documentation: src/inference_data.jl#L289
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:289-317 ```jldoctest cat julia> coords = (; a_dim=["x", "y", "z"]); julia> dims = dims=(; a=[:a_dim]); julia> data = Dict(:a => randn(100, 4, 3), :b => randn(100, 4)); julia> idata = from_dict(data; coords=coords, dims=dims) InferenceData with groups: > posterior julia> idata_cat1 = cat(idata, idata; dims=:chain) InferenceData with groups: > posterior julia> idata_cat1.posterior ╭─────────────────╮ │ 100×8×3 Dataset │ ├─────────────────┴──────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered ├──────────────────────────────────────────────────── layers ┤ :a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3 :b eltype: Float64 dims: draw, chain size: 100×8 ├────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" ``` Subexpression: idata_cat1.posterior Evaluated output: ┌ 100×8×3 Dataset ┐ ├─────────────────┴──────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered ├──────────────────────────────────────────────────── layers ┤ :a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3 :b eltype: Float64 dims: draw, chain size: 100×8 ├────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2025-01-17T00:54:13.817" Expected output: ╭─────────────────╮ │ 100×8×3 Dataset │ ├─────────────────┴──────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered ├──────────────────────────────────────────────────── layers ┤ :a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3 :b eltype: Float64 dims: draw, chain size: 100×8 ├────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" diff = Warning: Diff output requires color. ╭─────────────────╮ │ ┌ 100×8×3 Dataset │ ┐ ├─────────────────┴──────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered ├──────────────────────────────────────────────────── layers ┤ :a eltype: Float64 dims: draw, chain, a_dim size: 100×8×3 :b eltype: Float64 dims: draw, chain size: 100×8 ├────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
Documentation: src/inference_data.jl#L321
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:321-340 ```jldoctest cat julia> idata_cat2 = cat(idata, idata; dims=:run) InferenceData with groups: > posterior julia> idata_cat2.posterior ╭───────────────────╮ │ 100×4×3×2 Dataset │ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" ``` Subexpression: idata_cat2.posterior Evaluated output: ┌ 100×4×3×2 Dataset ┐ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2025-01-17T00:54:13.817" Expected output: ╭───────────────────╮ │ 100×4×3×2 Dataset │ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" diff = Warning: Diff output requires color. ╭───────────────────╮ │ ┌ 100×4×3×2 Dataset │ ┐ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
Documentation: src/inference_data.jl#L346
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:346-384 ```jldoctest cat julia> observed_data = Dict(:y => randn(10)); julia> idata2 = from_dict(data; observed_data=observed_data, coords=coords, dims=dims) InferenceData with groups: > posterior > observed_data julia> idata_cat3 = cat(idata, idata2; groups=(:posterior,), dims=:run) InferenceData with groups: > posterior > observed_data julia> idata_cat3.posterior ╭───────────────────╮ │ 100×4×3×2 Dataset │ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" julia> idata_cat3.observed_data ╭────────────────────╮ │ 10-element Dataset │ ├────────────── dims ┤ ↓ y_dim_1 ├────────────────────┴─────────────── layers ┐ :y eltype: Float64 dims: y_dim_1 size: 10 ├────────────────────────────────────────────┴ metadata ┐ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:53.539" ``` Subexpression: idata_cat3.posterior Evaluated output: ┌ 100×4×3×2 Dataset ┐ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2025-01-17T00:54:13.817" Expected output: ╭───────────────────╮ │ 100×4×3×2 Dataset │ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" diff = Warning: Diff output requires color. ╭───────────────────╮ │ ┌ 100×4×3×2 Dataset │ ┐ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434""2025-01-17T00:54:13.817"
Documentation: src/inference_data.jl#L346
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/src/inference_data.jl:346-384 ```jldoctest cat julia> observed_data = Dict(:y => randn(10)); julia> idata2 = from_dict(data; observed_data=observed_data, coords=coords, dims=dims) InferenceData with groups: > posterior > observed_data julia> idata_cat3 = cat(idata, idata2; groups=(:posterior,), dims=:run) InferenceData with groups: > posterior > observed_data julia> idata_cat3.posterior ╭───────────────────╮ │ 100×4×3×2 Dataset │ ├───────────────────┴─────────────────────────────────── dims ┐ ↓ draw , → chain, ↗ a_dim Categorical{String} ["x", "y", "z"] ForwardOrdered, ⬔ run ├─────────────────────────────────────────────────────────────┴ layers ┐ :a eltype: Float64 dims: draw, chain, a_dim, run size: 100×4×3×2 :b eltype: Float64 dims: draw, chain, run size: 100×4×2 ├──────────────────────────────────────────────────────────── metadata ┤ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:48.434" julia> idata_cat3.observed_data ╭────────────────────╮ │ 10-element Dataset │ ├────────────── dims ┤ ↓ y_dim_1 ├────────────────────┴─────────────── layers ┐ :y eltype: Float64 dims: y_dim_1 size: 10 ├────────────────────────────────────────────┴ metadata ┐ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:53.539" ``` Subexpression: idata_cat3.observed_data Evaluated output: ┌ 10-element Dataset ┐ ├────────────── dims ┤ ↓ y_dim_1 ├────────────────────┴─────────────── layers ┐ :y eltype: Float64 dims: y_dim_1 size: 10 ├────────────────────────────────────────────┴ metadata ┐ Dict{String, Any} with 1 entry: "created_at" => "2025-01-17T00:54:18.877" Expected output: ╭────────────────────╮ │ 10-element Dataset │ ├────────────── dims ┤ ↓ y_dim_1 ├────────────────────┴─────────────── layers ┐ :y eltype: Float64 dims: y_dim_1 size: 10 ├────────────────────────────────────────────┴ metadata ┐ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:53.539" diff = Warning: Diff output requires color. ╭────────────────────╮ │ ┌ 10-element Dataset │ ┐ ├────────────── dims ┤ ↓ y_dim_1 ├────────────────────┴─────────────── layers ┐ :y eltype: Float64 dims: y_dim_1 size: 10 ├────────────────────────────────────────────┴ metadata ┐ Dict{String, Any} with 1 entry: "created_at" => "2024-03-11T14:10:53.539""2025-01-17T00:54:18.877"
Documentation: ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl#L21
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl:21-42 ```jldoctest julia> using ArviZExampleData, PosteriorStats julia> idata = load_example_data("centered_eight"); julia> loo_result = loo(idata; var_name=:obs); julia> loo_pit(idata, loo_result.psis_result.log_weights; y_name=:obs) ╭────────────────────────────────────────────╮ │ 8-element DimArray{Float64, 1} loo_pit_obs │ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 ``` Subexpression: loo_pit(idata, loo_result.psis_result.log_weights; y_name=:obs) Evaluated output: ┌ 8-element DimArray{Float64, 1} loo_pit_obs ┐ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 Expected output: ╭────────────────────────────────────────────╮ │ 8-element DimArray{Float64, 1} loo_pit_obs │ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 diff = Warning: Diff output requires color. ╭────────────────────────────────────────────╮ │ ┌ 8-element DimArray{Float64, 1} loo_pit_obs │ ┐ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275
Documentation: ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl#L83
doctest failure in ~/work/InferenceObjects.jl/InferenceObjects.jl/ext/InferenceObjectsPosteriorStatsExt/loo_pit.jl:83-102 ```jldoctest julia> using ArviZExampleData, PosteriorStats julia> idata = load_example_data("centered_eight"); julia> loo_pit(idata; y_name=:obs) ╭────────────────────────────────────────────╮ │ 8-element DimArray{Float64, 1} loo_pit_obs │ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 ``` Subexpression: loo_pit(idata; y_name=:obs) Evaluated output: ┌ 8-element DimArray{Float64, 1} loo_pit_obs ┐ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 Expected output: ╭────────────────────────────────────────────╮ │ 8-element DimArray{Float64, 1} loo_pit_obs │ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275 diff = Warning: Diff output requires color. ╭────────────────────────────────────────────╮ │ ┌ 8-element DimArray{Float64, 1} loo_pit_obs │ ┐ ├────────────────────────────────────────────┴─────────────────────────── dims ┐ ↓ school Categorical{String} [Choate, Deerfield, …, St. Paul's, Mt. Hermon] Unordered └──────────────────────────────────────────────────────────────────────────────┘ "Choate" 0.943511 "Deerfield" 0.63797 "Phillips Andover" 0.316697 "Phillips Exeter" 0.582252 "Hotchkiss" 0.295321 "Lawrenceville" 0.403318 "St. Paul's" 0.902508 "Mt. Hermon" 0.655275
Documentation
Process completed with exit code 1.
Documentation: ../../../.julia/packages/DocumenterInterLinks/XD21f/src/interlinks.jl#L233
Failed to load inventory "NCDatasets" from possible source "https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv". exception = RequestError: HTTP/2 404 while requesting https://alexander-barth.github.io/NCDatasets.jl/stable/objects.inv
Downgrade / Julia 1.9 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Julia 1.9 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Julia pre - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Julia 1 - ubuntu-latest - x64 - schedule
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Julia 1 - macOS-latest - x64 - schedule
[setup-julia] x64 arch has been requested on a macOS runner that has an arm64 (Apple Silicon) architecture. You may have meant to use the "aarch64" arch instead (or left it unspecified for the correct default).
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache To ignore, set input `ignore-no-cache: true`