Add Scvelo/Dynamo conversion function #551
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Xiaojieqiu
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Oct 9, 2023
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| adata.layers["velocity_S"] = adata.layers.pop("velocity") | ||
| if "fit_alpha" in adata.var.columns: | ||
| adata.var["alpha"] = adata.var.pop("fit_alpha") | ||
| if "fit_beta" in adata.var.columns: | ||
| adata.var["beta"] = adata.var.pop("fit_beta") | ||
| if "fit_gamma" in adata.var.columns: | ||
| adata.var["gamma"] = adata.var.pop("fit_gamma") | ||
| if "fit_r2" in adata.var.columns: | ||
| adata.var["gamma_r2"] = adata.var.pop("fit_r2") | ||
| if "fit_u0" in adata.var.columns: | ||
| adata.var["u0"] = adata.var.pop("fit_u0") | ||
| if "fit_s0" in adata.var.columns: |
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I will do that after we merge the "Save velocity parameters to .varm instead .var" branch. Then we can utilize the helper function like get_vel_params() or update_vel_params().
| if "fit_u0" in adata.var.columns: | ||
| adata.var["u0"] = adata.var.pop("fit_u0") | ||
| if "fit_s0" in adata.var.columns: | ||
| adata.var["s0"] = adata.var.pop("fit_s0") |
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The function can convert anndata objects between the Scvelo one and Dynamo one.