circlator

Dockerfile for Circlator.

Run Container

Check dependencies

docker run --rm aquaron/circlator progcheck

PacBio data

Given an assembly assembly.fasta in FASTA format and corrected PacBio reads in a file called, reads.pacbio, run:

docker run --rm -v /tmp/data:/data aquaron/circlator all assembly.fasta reads.pacbio /data

sanger-pathogens/circlator

You can find source information here:

Sanger Pathogen GitHub Page