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Some minor code cleanup #1

Merged
merged 5 commits into from
Jun 28, 2024
Merged

Some minor code cleanup #1

merged 5 commits into from
Jun 28, 2024

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dcdehaas
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  • Rename some files/classes to better match the paper
  • Cleanup the MapMutations code for printing stats
  • Make the mutation iterator result more easy to work with
  • Fix the end-to-end test script which was still using the old-style commands

Some file/class names were from very old prototype ideas, and no
longer reflect the actual behavior.
The mutation iterator result should be much more readable, it is
used somewhat widely.
@dcdehaas dcdehaas merged commit 687cfec into main Jun 28, 2024
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@dcdehaas dcdehaas deleted the rename_and_nopair branch June 28, 2024 15:16
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