Fix CI/CD and release (#16)

* Fix pre-commit

* Release 0.1.4

.github/workflows/documentation.yaml

@@ -22,7 +22,7 @@ jobs:
       - name: Install Poetry
         uses: snok/install-poetry@v1
         with:
-          version: 1.2.2
+          version: 1.3.2
           virtualenvs-in-project: true
       - name: Install dependencies
         run: poetry install --only docs

.github/workflows/release.yml

@@ -21,7 +21,7 @@ jobs:
       - name: Install Poetry
         uses: snok/install-poetry@v1
         with:
-          version: 1.2.2
+          version: 1.3.2
           virtualenvs-in-project: true
       - name: Load cached venv
         id: cached-poetry-dependencies

.github/workflows/tests.yml

@@ -66,7 +66,7 @@ jobs:
       - name: Install Poetry
         uses: snok/install-poetry@v1
         with:
-          version: 1.2.2
+          version: 1.3.2
           virtualenvs-in-project: true
       - name: Load cached venv
         id: cached-poetry-dependencies
@@ -110,7 +110,7 @@ jobs:
       - name: Install Poetry
         uses: snok/install-poetry@v1
         with:
-          version: 1.2.2
+          version: 1.3.2
           virtualenvs-in-project: true
       - name: Install dependencies
         run: poetry install --only docs

.pre-commit-config.yaml

@@ -29,7 +29,7 @@ repos:
     hooks:
       - id: black
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.13.0"
+    rev: "v1.12.1"
     hooks:
       - id: blacken-docs
   - repo: https://github.com/pycqa/flake8

README.md

@@ -56,7 +56,7 @@ pip install edsteva
 We recommend pinning the library version in your projects, or use a strict package manager like [Poetry](https://python-poetry.org/).
 
 ```
-pip install edsteva==0.1.3
+pip install edsteva==0.1.4
 ```
 ## Example
 

changelog.md

@@ -1,5 +1,8 @@
 # Changelog
+## v0.1.4 - 02-02-2023
 
+- ConditionProbe: Take UF and Pole into account for ORBIS source system.
+- Binder: Presentation available.
 ## v0.1.3 - 22-12-2022
 
 - ConditionProbe: Update, computed as a proportion of number of visit.

docs/components/model.md

@@ -98,9 +98,9 @@ If none of the available Models meets your requirements, you may want to create
 from edsteva.models import BaseModel
 from edsteva.probes import BaseProbe
 
+
 # Definition of a new Model class
 class CustomProbe(BaseModel):
-
     _coefs = ["my_model_coefficient_1", "my_model_coefficient_2"]
 
     def fit_process(self, probe: BaseProbe):

docs/components/probe.md

@@ -101,9 +101,9 @@ If none of the available Probes meets your requirements, you may want to create
 ```python
 from edsteva.probes import BaseProbe
 
+
 # Definition of a new Probe class
 class CustomProbe(BaseProbe):
-
     _index = ["my_custom_column_1", "my_custom_column_2"]
 
     def compute_process(self, data: Data):

docs/index.md

@@ -98,7 +98,7 @@ color:green Successfully installed edsteva
 We recommend pinning the library version in your projects, or use a strict package manager like [Poetry](https://python-poetry.org/).
 
 ```
-pip install edsteva==0.1.3
+pip install edsteva==0.1.4
 ```
 ## Working example: administrative records relative to visits
 

edsteva/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "0.1.3"
+__version__ = "0.1.4"
 
 
 import importlib

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "edsteva"
-version = "0.1.3"
+version = "0.1.4"
 description = "EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records."
 authors = ["Adam Remaki <[email protected]>", "Vicent Maladiere <[email protected]>", "Benoit Playe <[email protected]>", "Romain Bey <[email protected]>", "Paul Bernard <[email protected]>"]
 keywords = ["OMOP", "Data Analysis", "Electronic health record"]