chore: bump version to 0.15.0 #1801
Workflow file for this run
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name: Tests and Linting | |
on: | |
workflow_dispatch: | |
pull_request: | |
push: | |
branches: [master] | |
env: | |
# UV_INDEX_STRATEGY: "unsafe-first-match" | |
# UV_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu" | |
PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu" | |
jobs: | |
linting: | |
name: Linting | |
if: github.event_name == 'pull_request' | |
runs-on: ubuntu-22.04 | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
# requites to grab the history of the PR | |
fetch-depth: 0 | |
- uses: actions/setup-python@v4 | |
with: | |
cache: 'pip' | |
- uses: pre-commit/[email protected] | |
with: | |
extra_args: --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} | |
pytest: | |
name: Pytest | |
runs-on: ubuntu-22.04 | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.7", "3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Cache downloaded resources | |
uses: actions/cache@v3 | |
with: | |
path: ~/.data/ | |
key: resources | |
# - name: Cache pip | |
# uses: actions/cache@v3 | |
# with: | |
# path: ~/.cache/pip | |
# key: ${{ runner.os }}-python-${{ matrix.python-version }}-pip | |
- run: echo WEEK=$(date +%V) >>$GITHUB_ENV | |
shell: bash | |
# - uses: hynek/setup-cached-uv@v1 | |
# with: | |
# cache-suffix: -tests-${{ matrix.python-version }}-${{ env.WEEK }} | |
- name: Set up Java | |
uses: actions/setup-java@v2 | |
with: | |
distribution: "temurin" # See 'Supported distributions' for available options | |
java-version: "8" | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
- name: Install dependencies | |
run: | | |
pip install poetry | |
pip install -e '.[dev,setup]' pytest-xdist pip | |
if: matrix.python-version != '3.10' | |
# uv venv | |
# source .venv/bin/activate | |
# uv pip install -e '.[dev,setup]' pytest-xdist pip | |
- name: Install dependencies | |
run: | | |
pip install poetry | |
pip install -e '.[dev-no-ml,setup]' pytest-xdist pip | |
if: matrix.python-version == '3.10' | |
- name: Test with Pytest on Python ${{ matrix.python-version }} | |
env: | |
UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
run: | | |
coverage run -m pytest --ignore tests/test_docs.py # -n auto | |
# coverage combine | |
# mv .coverage .coverage.${{ matrix.python-version }} | |
# source .venv/bin/activate | |
if: matrix.python-version != '3.9' | |
- name: Test with Pytest on Python ${{ matrix.python-version }} | |
env: | |
UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
run: | | |
coverage run -m pytest # -n auto | |
# coverage combine | |
# mv .coverage .coverage.${{ matrix.python-version }} | |
# source .venv/bin/activate | |
if: matrix.python-version == '3.9' | |
- name: Upload coverage data | |
uses: actions/upload-artifact@v4 | |
with: | |
name: coverage-data-${{ matrix.python-version }} | |
path: .coverage.* | |
if-no-files-found: ignore | |
include-hidden-files: true | |
coverage: | |
name: Coverage | |
needs: pytest | |
uses: aphp/foldedtensor/.github/workflows/coverage.yml@main | |
with: | |
base-branch: master | |
coverage-data-pattern: coverage-data-* | |
coverage-report: coverage.txt | |
coverage-badge: coverage.svg | |
coverage-branch: coverage | |
documentation: | |
name: Documentation | |
runs-on: ubuntu-22.04 | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.9" | |
cache: 'pip' | |
- run: echo WEEK=$(date +%V) >>$GITHUB_ENV | |
shell: bash | |
# - uses: hynek/setup-cached-uv@v1 | |
# with: | |
# cache-suffix: -docs-${{ matrix.python-version }}-${{ env.WEEK }} | |
- name: Install dependencies | |
run: | | |
pip install '.[docs]' | |
# uv venv | |
# uv pip install '.[docs]' | |
- name: Build documentation | |
run: | | |
mkdocs build --clean | |
# source .venv/bin/activate | |
simple-installation: | |
name: Simple installation | |
runs-on: ubuntu-22.04 | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: 'pip' | |
- run: echo WEEK=$(date +%V) >>$GITHUB_ENV | |
shell: bash | |
# - uses: hynek/setup-cached-uv@v1 | |
# with: | |
# cache-suffix: -simple-install-${{ matrix.python-version }}-${{ env.WEEK }} | |
- name: Install library | |
run: | | |
pip install ".[ml]" pytest | |
pytest tests/pipelines/test_pipelines.py | |
# uv venv | |
# uv pip install . |