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feat(algorithm): support random walk in computer #274

Merged
merged 12 commits into from
Oct 28, 2023
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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with this
* work for additional information regarding copyright ownership. The ASF
* licenses this file to You under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*/

package org.apache.hugegraph.computer.algorithm.sampling;

import org.apache.hugegraph.computer.core.common.exception.ComputerException;
import org.apache.hugegraph.computer.core.config.Config;
import org.apache.hugegraph.computer.core.graph.edge.Edge;
import org.apache.hugegraph.computer.core.graph.edge.Edges;
import org.apache.hugegraph.computer.core.graph.id.Id;
import org.apache.hugegraph.computer.core.graph.value.IdList;
import org.apache.hugegraph.computer.core.graph.value.IdListList;
import org.apache.hugegraph.computer.core.graph.vertex.Vertex;
import org.apache.hugegraph.computer.core.worker.Computation;
import org.apache.hugegraph.computer.core.worker.ComputationContext;
import org.apache.hugegraph.util.Log;
import org.slf4j.Logger;

import java.util.Iterator;
import java.util.Random;

public class RandomWalk implements Computation<RandomWalkMessage> {

private static final Logger LOG = Log.logger(RandomWalk.class);

public static final String OPTION_WALK_PER_NODE = "randomwalk.walk_per_node";
public static final String OPTION_WALK_LENGTH = "randomwalk.walk_length";

/**
* number of times per vertex(source vertex) walks
*/
private Integer walkPerNode;

/**
* walk length
*/
private Integer walkLength;

/**
* random
*/
private Random random;

@Override
public String category() {
return "sampling";
}

@Override
public String name() {
return "random_walk";
}

@Override
public void init(Config config) {
this.walkPerNode = config.getInt(OPTION_WALK_PER_NODE, 3);
if (this.walkPerNode <= 0) {
throw new ComputerException("The param %s must be greater than 0, " +

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"actual got '%s'",
OPTION_WALK_PER_NODE, this.walkPerNode);
}
LOG.info("[RandomWalk] algorithm param, {}: {}", OPTION_WALK_PER_NODE, walkPerNode);

this.walkLength = config.getInt(OPTION_WALK_LENGTH, 3);
if (this.walkLength <= 0) {
throw new ComputerException("The param %s must be greater than 0, " +

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"actual got '%s'",
OPTION_WALK_LENGTH, this.walkLength);
}
LOG.info("[RandomWalk] algorithm param, {}: {}", OPTION_WALK_LENGTH, walkLength);

this.random = new Random();
}

@Override
public void compute0(ComputationContext context, Vertex vertex) {
vertex.value(new IdListList());

RandomWalkMessage message = new RandomWalkMessage();
message.addToPath(vertex);

if (vertex.numEdges() <= 0) {
// isolated vertex
this.savePath(vertex, message.path()); // save result
vertex.inactivate();
return;
}

for (int i = 0; i < walkPerNode; ++i) {
// random select one edge and walk
Edge selectedEdge = this.randomSelectEdge(vertex.edges());
context.sendMessage(selectedEdge.targetId(), message);
}
}

@Override
public void compute(ComputationContext context, Vertex vertex,
Iterator<RandomWalkMessage> messages) {
while (messages.hasNext()) {
RandomWalkMessage message = messages.next();

if (message.isFinish()) {
this.savePath(vertex, message.path()); // save result

vertex.inactivate();
continue;
}

message.addToPath(vertex);

if (vertex.numEdges() <= 0) {
// there is nowhere to walk,finish eariler
message.finish();
context.sendMessage(this.getSourceId(message.path()), message);

vertex.inactivate();
continue;
}

if (message.path().size() >= this.walkLength + 1) {
message.finish();
Id sourceId = this.getSourceId(message.path());

if (vertex.id().equals(sourceId)) {
// current vertex is the source vertex,no need to send message once more
this.savePath(vertex, message.path()); // save result
} else {
context.sendMessage(sourceId, message);
}

vertex.inactivate();
continue;
}

// random select one edge and walk
Edge selectedEdge = this.randomSelectEdge(vertex.edges());
context.sendMessage(selectedEdge.targetId(), message);
}
}

/**
* random select one edge
*/
private Edge randomSelectEdge(Edges edges) {
Edge selectedEdge = null;
int randomNum = random.nextInt(edges.size());

int i = 0;
Iterator<Edge> iterator = edges.iterator();
while (iterator.hasNext()) {
selectedEdge = iterator.next();
if (i == randomNum) {
break;
}
i++;
}

return selectedEdge;
}

/**
* get source id of path
*/
private Id getSourceId(IdList path) {
// the first id of path is the source id
return path.get(0);
}

/**
* save path
*/
private void savePath(Vertex sourceVertex, IdList path) {
IdListList curValue = sourceVertex.value();
curValue.add(path.copy());
}
}
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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with this
* work for additional information regarding copyright ownership. The ASF
* licenses this file to You under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*/

package org.apache.hugegraph.computer.algorithm.sampling;

import org.apache.hugegraph.computer.core.graph.value.BooleanValue;
import org.apache.hugegraph.computer.core.graph.value.IdList;
import org.apache.hugegraph.computer.core.graph.value.Value;
import org.apache.hugegraph.computer.core.graph.vertex.Vertex;
import org.apache.hugegraph.computer.core.io.RandomAccessInput;
import org.apache.hugegraph.computer.core.io.RandomAccessOutput;

import java.io.IOException;
import java.util.List;

public class RandomWalkMessage implements Value.CustomizeValue<List<Object>> {

/**
* random walk path
*/
private final IdList path;

/**
* finish flag
*/
private BooleanValue isFinish;

public RandomWalkMessage() {
this.path = new IdList();
this.isFinish = new BooleanValue(false);
}

@Override
public void read(RandomAccessInput in) throws IOException {
this.path.read(in);
this.isFinish.read(in);
}

@Override
public void write(RandomAccessOutput out) throws IOException {
this.path.write(out);
this.isFinish.write(out);
}

@Override
public List<Object> value() {
return this.path.value();

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}

public IdList path() {
return this.path;
}

public void addToPath(Vertex vertex) {
this.path.add(vertex.id());
}

public boolean isFinish() {
return this.isFinish.boolValue();
}

public void finish() {
this.isFinish = new BooleanValue(true);
}
}
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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with this
* work for additional information regarding copyright ownership. The ASF
* licenses this file to You under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*/

package org.apache.hugegraph.computer.algorithm.sampling;

import org.apache.hugegraph.computer.core.graph.value.IdListList;
import org.apache.hugegraph.computer.core.graph.vertex.Vertex;
import org.apache.hugegraph.computer.core.output.hg.HugeGraphOutput;

import java.util.ArrayList;
import java.util.List;

public class RandomWalkOutput extends HugeGraphOutput<List<String>> {

@Override
protected void prepareSchema() {
this.client().schema().propertyKey(this.name())
.asText()
.writeType(this.writeType())
.valueList()
.ifNotExist()
.create();
}

@Override
protected List<String> value(Vertex vertex) {
IdListList value = vertex.value();
List<String> propValues = new ArrayList<>();
for (int i = 0; i < value.size(); i++) {
propValues.add(value.get(i).toString());
}
return propValues;
}
}
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/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with this
* work for additional information regarding copyright ownership. The ASF
* licenses this file to You under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*/

package org.apache.hugegraph.computer.algorithm.sampling;

import org.apache.hugegraph.computer.algorithm.AlgorithmParams;
import org.apache.hugegraph.computer.core.config.ComputerOptions;
import org.apache.hugegraph.computer.core.graph.value.IdListList;

import java.util.Map;

public class RandomWalkParams implements AlgorithmParams {

@Override
public void setAlgorithmParameters(Map<String, String> params) {
this.setIfAbsent(params, ComputerOptions.WORKER_COMPUTATION_CLASS,
RandomWalk.class.getName());
this.setIfAbsent(params, ComputerOptions.ALGORITHM_MESSAGE_CLASS,
RandomWalkMessage.class.getName());
this.setIfAbsent(params, ComputerOptions.ALGORITHM_RESULT_CLASS,
IdListList.class.getName());
this.setIfAbsent(params, ComputerOptions.OUTPUT_CLASS,
RandomWalkOutput.class.getName());

this.setIfAbsent(params, RandomWalk.OPTION_WALK_PER_NODE, "3");
this.setIfAbsent(params, RandomWalk.OPTION_WALK_LENGTH, "3");
}
}
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Expand Up @@ -28,6 +28,7 @@
import org.apache.hugegraph.computer.algorithm.community.wcc.WccTest;
import org.apache.hugegraph.computer.algorithm.path.rings.RingsDetectionTest;
import org.apache.hugegraph.computer.algorithm.path.rings.RingsDetectionWithFilterTest;
import org.apache.hugegraph.computer.algorithm.sampling.RandomWalkTest;
import org.junit.runner.RunWith;
import org.junit.runners.Suite;

Expand All @@ -43,7 +44,8 @@
RingsDetectionWithFilterTest.class,
ClusteringCoefficientTest.class,
ClosenessCentralityTest.class,
BetweennessCentralityTest.class
BetweennessCentralityTest.class,
RandomWalkTest.class
})
public class AlgorithmTestSuite {
}
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