methyLImp2 package is the implementation of the updated version of the methyLImp method for missing value imputation in methylation data. Compared to the previous version, implementation is parallelised over chromosomes since probes on different chromosomes are usually independent. Moreover, mini-batch approach to reduce the runtime in case of large number of samples is available.
Package is available from Bioconductor! To install, run
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methyLImp2")
To install from Github, run
#install.packages("devtools")
library("devtools")
install_github("annaplaksienko/methyLImp2", build_vignettes = TRUE)
To open the vignette, run
library(methyLImp2)
browseVignettes("methyLImp2")