V-Fold

Source code of program for protein distance map prediction

We used PyTorch as neural network framework

Tutorial

Dataset was developed with agreement to language processing models

Input is sequence of amino acid and first amino acid is target to we try to find distance map

Input example:

Input words volume is $20$ and we build sentences of any length

Output sequence words is sequence number of amino acid which to contact with target and distance $d \in \mathbb{N}$ as angstroms

5,6 7,5

All output words count is sequence maximum sequence length and count of natural numbers between 0 and cutoff distance

Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
.idea		.idea
sets		sets
3rjp.pdb		3rjp.pdb
3u3g.pdb		3u3g.pdb
5nz9.pdb		5nz9.pdb
EntropyAnalyzer.py		EntropyAnalyzer.py
FramesConverter.py		FramesConverter.py
PDB.py		PDB.py
README.md		README.md
create_database.sql		create_database.sql
main.py		main.py
protein.py		protein.py
water_insertion.sql		water_insertion.sql