self-install-update (#9)

* just the beginning of self-installation pkg

* emergency bkp due to covid-19 shutdown

* first self installing (not yet updating) attempt

* Add files via upload

Cover picture taken from this article: https://www.themoscowtimes.com/2016/12/30/russia-hacker-superpower-a56704

also mentioned here, in this reddit: https://www.reddit.com/r/russia/comments/5lbbm3/how_russia_became_a_hacking_superpower/

* Update README.md

* Update README.md

* Create LICENSE

* Update README.md

* fix .vimrc installation because of some syntax issues

* galledanza_dir & PATH vars are now properly set

* maybe working update-galledanza test

* resource .config everytime

* add versioning tags

.bash_profile

@@ -0,0 +1,50 @@
+# .bash_profile
+
+# Get the aliases and functions
+if [ -f ~/.bashrc ]; then
+	. ~/.bashrc
+fi
+
+# User specific environment and startup programs
+
+PATH=$PATH:$HOME/.local/bin:$HOME/bin
+
+export PATH
+
+galledanza_dir=`dirname "${BASH_SOURCE[0]}"`
+
+export galledanza_dir
+
+# set PATH so it includes galledanza's private bin
+if [ -d $galledanza_dir/bin ] ; then
+    PATH=$galledanza_dir/bin:"${PATH}"
+fi
+
+export PATH
+
+if [ -f $galledanza_dir/.config ]; then
+	. $galledanza_dir/.config
+fi
+
+PS1="\[\033[36m\]\u\[\033[m\]@\[\033[32m\]\h:\[\033[33;1m\]\W\[\033[m\]\$ "
+
+export PS1
+
+LSCOLORS="di=1;36;40:ln=1;31;40:so=32:pi=33:ex=35;40:bd=37;40:cd=37;42:su=35;47:sg=35;47:tw=1;36;44:ow=1;36;44"
+
+export LSCOLORS
+
+VISUAL=vim
+
+export VISUAL
+
+EDITOR="$VISUAL"
+
+export EDITOR
+
+## enable programmable completion features
+#
+#if [ -f /etc/bash_completion ] && ! shopt -oq posix; then
+#    . /etc/bash_completion
+#fi
+

.bashrc

@@ -0,0 +1,34 @@
+# .bashrc
+
+# Source global definitions
+if [ -f /etc/bashrc ]; then
+	. /etc/bashrc
+fi
+
+# Uncomment the following line if you don't like systemctl's auto-paging feature:
+# export SYSTEMD_PAGER=
+
+# User specific aliases and functions
+
+alias l='ls -lrth --color'
+alias ll='ls -lrtha --color'
+#alias ssh='ssh -X'
+alias cl='clear'
+alias grep='grep --color=auto'
+alias bp='vi .bashrc'
+alias sbp='source .bashrc'
+alias pwx='pwd | xclip'
+alias cx='xclip -o'
+alias lf='ls -lrht *.f*'
+alias lF='ls -lrht *.F*'
+alias ld='ls -lrht *.dat'
+alias sbag='. sbag'
+alias sqag='squeue -u agallega --format="%10i%10u%15a%20j%5t%25R%10M%13l%8D%5C"'
+alias srag='sqag | grep "$(jobname) "'
+alias vv='vi *[^make].log'
+alias vvv='tail -f *[^make].log'
+alias mmm='simlog=$(ls | sort -V | tail -n 1); tail -f $simlog'
+alias mmake='make -j8'
+
+alias came='ssh -C [email protected]'
+alias cama='ssh -C [email protected]'

.config

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+git config --global user.email "[email protected]"
+git config --global user.name  "andreagalle"
+
+cd $galledanza_dir
+
+echo ""
+echo "...galledanza package `git describe --tags` loaded"
+echo ""
+
+cd $OLDPWD
+

.vimrc

@@ -0,0 +1,12 @@
+" .vimrc
+
+let fortran_free_source=1
+let fortran_have_tabs=1
+let fortran_more_precise=1
+let fortran_do_enddo=1
+
+syntax on
+colorscheme desert
+
+set ignorecase
+set number

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2020 Andrea Gallegati
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -1,2 +1,12 @@
-# galledanza-pkg
+# galledanza package
 Self-installing package to automatically set user defined commands & preferences (aliases, etc...)
+
+![alt text](/doc/MoscowTimes.png) <!-- taken from here: https://www.themoscowtimes.com/2016/12/30/russia-hacker-superpower-a56704 -->
+
+## setting up email alerts
+
+1. edit the folllowing `sudo vi /etc/exim4/update-exim4.conf.conf` changing: 
+  * from `dc_eximconfig_configtype='local'`
+  * to   `dc_eximconfig_configtype='internet'`
+2. finally launch `su /etc/init.d/exim4 restart` 
+

bin/bkpag

@@ -0,0 +1 @@
+nohup rsync -vaPuz *_2pp [email protected]:/var/services/homes/gallegati/gallegati-si-ftac-2019 >> gallegati-si-ftac-2019-rsync.log

bin/dv

@@ -0,0 +1,3 @@
+keyword=$1
+#optpath=$2
+grep --color=auto -inr $keyword ./* #$optpath

bin/myGit_diff.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+# un-comment one diff tool you'd like to use
+
+# side-by-side diff with custom options:
+# /usr/bin/sdiff -w200 -l "$2" "$5" 
+
+# using kdiff3 as the side-by-side diff:
+# /usr/bin/kdiff3 "$2" "$5"
+
+# using Meld 
+#/usr/bin/meld "$2" "$5"
+
+# using VIM
+ /usr/bin/vim -d "$2" "$5"

bin/rocall

@@ -0,0 +1 @@
+du -hs * | sort -h

bin-galledanza/sbag → bin/sbag

@@ -1,7 +1,13 @@
+#!/bin/bash
+
 ulimit -s unlimited
+
 OMP_NUM_THREADS=$1
 export OMP_NUM_THREADS
-KMP_STACKSIZE=16000000
-export KMP_STACKSIZE
+
+OMP_STACKSIZE=16000000
+export OMP_STACKSIZE
+
 nohup ./$2 >> $2.log &
+
 tail -f --pid=$(pgrep $2) $2.log

bin/shifter

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+SHFITER=$2
+
+for i in $1*
+do
+  OLDNAME=$i
+#  echo $OLDNAME
+  OLDITER="$(echo $OLDNAME | sed -e s/[^0-9]//g)"
+#  echo $OLDITER
+  NEWITER=$(($((10#$OLDITER)) + $((10#$SHFITER))))
+#  echo $NEWITER
+  NEWITER=$(printf "%06d" $NEWITER)
+#  echo $NEWITER
+  NEWNAME="$(echo $OLDNAME | sed -e s/$OLDITER/$NEWITER/g)"
+#  echo $NEWNAME
+  echo "mv $OLDNAME $NEWNAME"
+  mv -- "$i" "$NEWNAME"
+done

bin/smag

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+ulimit -s unlimited
+
+OMP_NUM_THREADS=$1
+export OMP_NUM_THREADS
+
+OMP_STACKSIZE=16000000
+export OMP_STACKSIZE
+
+exe=$2
+log=$2.log
+
+nohup ./$exe >> $log &
+
+job=${exe:0:15}
+
+tail -f --pid=$(pgrep $job) $log
+
+tail -n 100 $log | mail -s "$exe" [email protected]

bin/squag

@@ -0,0 +1,2 @@
+squeue -u agallega --format="%10i%10u%15a%20j%5t%25R%10M%13l%8D%5C"
+

bin/stero2monomp4

@@ -0,0 +1 @@
+ffmpeg -i $1 -strict -2 -filter_complex "amerge,pan=stereo:c0<c0+c2:c1<c1+c3" mono_$1

bin/tmap

@@ -0,0 +1,2 @@
+git log --graph --decorate --oneline
+

bin/trailing_sbatch

@@ -0,0 +1,33 @@
+#!/bin/bash
+
+if [ "$#" -lt 2 ]; then
+    echo "Illegal number of parameters. Give 2 or 3 parameters as follows"
+    echo "./trailing_sbatch <submit_script> <number_of_jobs> [<initial_afterok_jobid>]"
+    exit 1
+fi
+
+SUB_SCRIPT=$1
+N_JOBS=$2
+
+echo "Submitting executable $SUB_SCRIPT for $N_JOBS times"
+
+echo "Submission number: 1"
+
+if [ -z "$3" ]; then
+    echo "sbatch $SUB_SCRIPT > temp.sbatch"
+    sbatch $SUB_SCRIPT > temp.sbatch
+else
+    echo "sbatch $SUB_SCRIPT --dependency=afterany:$3 > temp.sbatch"
+    sbatch --dependency=afterany:$3 $SUB_SCRIPT  > temp.sbatch
+fi
+
+JOBID=$(cat temp.sbatch | cut -d " " -f4)
+
+for i in $(seq 2 $N_JOBS); do
+  echo "Submission number: $i"
+  echo "sbatch $SUB_SCRIPT --dependency=afterany:$JOBID > temp.sbatch"
+  sbatch --dependency=afterany:$JOBID $SUB_SCRIPT > temp.sbatch
+  JOBID=$(cat temp.sbatch | cut -d " " -f4)
+done
+
+/bin/rm -f temp.sbatch

bin/update-galledanza

@@ -0,0 +1,21 @@
+#!/bin/bash
+
+cd $galledanza_dir
+
+echo ""
+echo "...updating galledanza package from `git describe --tags`"
+echo ""
+
+git checkout master
+git pull
+
+. $galledanza_dir/.bash_profile 
+. $galledanza_dir/.bashrc
+. $galledanza_dir/.config
+
+echo ""
+echo "...galledanza package updated to `git describe --tags`"
+echo ""
+
+cd $OLDPWD
+

bin/vvag

@@ -0,0 +1,2 @@
+tail -f $(ls -tr *.out | tail -1)
+

install

@@ -0,0 +1,89 @@
+#!/bin/bash
+
+echo ""
+echo "...installing galledanza package `git describe --tags`"
+echo ""
+
+galledanza_dir=$PWD
+
+echo ""
+echo "...installing custom $galledanza_dir/.bash_profile"
+echo ""
+
+cat <<EOT >> ~/.bash_profile
+
+# added by galledanza `git describe --tags` installer
+
+if [ -f $galledanza_dir/.bash_profile ]; then
+	. $galledanza_dir/.bash_profile 
+fi
+
+EOT
+
+. ~/.bash_profile
+
+cat $galledanza_dir/.bash_profile
+
+echo ""
+echo "...user $galledanza_dir/.bash_profile installed."
+echo ""
+
+echo ""
+echo "...installing custom $galledanza_dir/.bashrc"
+echo ""
+
+cat <<EOT >> ~/.bashrc 
+
+# added by galledanza `git describe --tags` installer
+
+if [ -f $galledanza_dir/.bashrc ]; then
+	. $galledanza_dir/.bashrc
+fi
+
+EOT
+
+. ~/.bashrc
+
+cat $galledanza_dir/.bashrc
+
+echo ""
+echo "...user $galledanza_dir/.bashrc installed."
+echo ""
+
+echo ""
+echo "...installing custom $galledanza_dir/.vimrc"
+echo ""
+
+cat <<EOT >> ~/.vimrc 
+
+" added by galledanza `git describe --tags` installer
+
+function! SomeCheck()
+   if filereadable("$galledanza_dir/.vimrc")
+       so "$galledanza_dir/.vimrc"
+   endif
+endfunction
+
+EOT
+
+cat $galledanza_dir/.vimrc
+
+echo ""
+echo "...user $galledanza_dir/.vimrc installed."
+echo ""
+
+echo ""
+echo "...setting custom $galledanza_dir/.config"
+echo ""
+
+. $galledanza_dir/.config
+
+cat $galledanza_dir/.config
+
+echo ""
+echo "...user $galledanza_dir/.config set."
+echo ""
+
+echo "...the galledanza package installation is completed."
+echo ""
+