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Write tests for core functions#35

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alexbovet merged 88 commits intomainalexbovet/flow_stability:mainfrom 12-test-suite-covering-core-functionalityalexbovet/flow_stability:12-test-suite-covering-core-functionalityCopy head branch name to clipboardDec 17, 2024

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Commits on Aug 19, 2024

• adding code coverage

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Commits on Aug 20, 2024

• Merge branch 'main' into 12-test-suite-covering-core-functionality

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• started SSM init tests

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• silence linter

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• fixing wrong testing command

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• auto-convert to float if needed

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• corrected filename

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• show memory usage and timeing

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• typing

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• speed and memory checks

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Commits on Aug 21, 2024

• adding details about the ssm

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• using also __init__ docstring

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• minor formating corection

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• added autodoc ext to sphinx

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• fixing python version also for rtd

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• configure autoapi instead of autodoc

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Commits on Aug 22, 2024

• separate memory tracking tests with _memory in name

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• better typing

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• make cython and non-cython implementatios testable

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• separating inplace row norm

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• try to satisfy long long vs int

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Commits on Sep 2, 2024

• minor - avoid declaring unused params

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• target src for coverage

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• config for test coverage

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• cleaning up

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• allow coverage to trace lines

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• reporting code coverage

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• establish jobs order

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• using correct secret

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• always run coverage

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• run coverage report

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• remove plugin for codecov reports

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• single folder several files

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• specify package location

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• using local install

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• workaround for hidden files

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• site-package install but discover package name

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• fixign artifact option

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• sepcify source in config to use relative files

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• fixing coverage options

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• minor edits

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• micro

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• started with more tests

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• testing mkl

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• float matrices

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• matmul testing

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• testing with larger matrices

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Commits on Sep 3, 2024

• testing mkl and blas/lapak

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Commits on Sep 14, 2024

• wip on profiling and testing csr ops

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• completing tests for csr methods

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Commits on Sep 15, 2024

• testing with comparison crs_ operations

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• show all memory reports

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• covering conversion from/to ssm

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Commits on Sep 16, 2024

• formatting docstring - correcting description

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• temp. fix for type inconsistency - see #43

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• minor formatting

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• tests for inplace ops with diag matrix

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• minor correction

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• bettery typeing

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• adding tests for sparse_autocov_mat inits

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Commits on Sep 17, 2024

• adding tests for SAM creation (also from T)

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• better docstring formatting

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• drop the math mode

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Commits on Sep 23, 2024

• ditch passing by possition

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• including more methods for SAM

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Commits on Sep 25, 2024

• started with synthtempnetwork

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Commits on Sep 27, 2024

• adding minimal tests for synth_temp_network subm

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• started with flow_stability sub-m

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Commits on Sep 29, 2024

• initiating FlowStability tests

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• init tests for parallel_expm

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• init tests for temporal_network

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• init tests for parallel_clustering

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• minor formatting

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• minor notes/info

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• minor edits; init cython testing

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Commits on Sep 30, 2024

• simple test cases

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• better bassis for test data generation

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• tests for temp networks

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• minor fixes

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• scipy upgrade - use sparse_dot_mk for mkl support

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• minor formatting

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• minor fix in assertion

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Commits on Dec 16, 2024

• Merge branch 'main' into 12-test-suite-covering-core-functionality

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• cleaning up old tests

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• cleaning up all tests for discarded implementations

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• fixing the data type for now to double

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• adapting lifetime of modified objects

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• adapting to new definitions

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