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updated squidward and mbappe #476

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merged 18 commits into from
Aug 22, 2024
Merged

updated squidward and mbappe #476

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e2ea546
manage bias in periodic-other
ignacioreyes Jul 22, 2024
02b1f23
removing bias in atat
ignacioreyes Jul 30, 2024
9e35f3e
unbias periodic other for atat, one quantile transform for all features
ignacioreyes Aug 1, 2024
fe05cca
Merge branch 'main' of github.com:alercebroker/pipeline into ATAT_exp…
ignacioreyes Aug 13, 2024
b46da9e
min detections for classifiers (based on Alex's code)
ignacioreyes Aug 14, 2024
fa0fc3a
Merge branch 'main' of github.com:alercebroker/pipeline into ATAT_exp…
ignacioreyes Aug 14, 2024
be1a903
save astro objects refactoring
ignacioreyes Aug 19, 2024
9962e1c
docker compose v2 as default, apf poetry updated
ignacioreyes Aug 19, 2024
c6c1c6e
some docker compose fixes, trying to repair poetry
ignacioreyes Aug 19, 2024
a3602b0
still fighting with poetry
ignacioreyes Aug 19, 2024
9e6231e
fight with poetry, another round
ignacioreyes Aug 19, 2024
e2a17db
wget out of requirements
ignacioreyes Aug 20, 2024
746c032
Merge branch 'main' of github.com:alercebroker/pipeline into ATAT_exp…
ignacioreyes Aug 20, 2024
0bfae63
updated submodule
ignacioreyes Aug 20, 2024
ce7da4b
updated submodule (?)
ignacioreyes Aug 20, 2024
4c34553
goodbye messi TEST_MESSI_HEADER_QUANTILES_PATH
ignacioreyes Aug 20, 2024
01a1e23
playing with secrets
ignacioreyes Aug 20, 2024
341d3f2
some reqs for stamp classifier
ignacioreyes Aug 20, 2024
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2 changes: 0 additions & 2 deletions .github/workflows/apf.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -150,7 +150,6 @@ jobs:
TEST_BALTO_MODEL_PATH: "${{ secrets.TEST_BALTO_MODEL_PATH }}"
TEST_BALTO_QUANTILES_PATH: "${{ secrets.TEST_BALTO_QUANTILES_PATH }}"
TEST_MESSI_MODEL_PATH: "${{ secrets.TEST_MESSI_MODEL_PATH }}"
TEST_MESSI_HEADER_QUANTILES_PATH: "${{ secrets.TEST_MESSI_HEADER_QUANTILES_PATH }}"
TEST_MESSI_FEATURE_QUANTILES_PATH: "${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}"
TEST_TORETTO_MODEL_PATH: "${{ secrets.TEST_TORETTO_MODEL_PATH }}"
TEST_BARNEY_MODEL_PATH: "${{ secrets.TEST_BARNEY_MODEL_PATH }}"
Expand All @@ -169,7 +168,6 @@ jobs:
TEST_BALTO_MODEL_PATH: "${{ secrets.TEST_BALTO_MODEL_PATH }}"
TEST_BALTO_QUANTILES_PATH: "${{ secrets.TEST_BALTO_QUANTILES_PATH }}"
TEST_MESSI_MODEL_PATH: "${{ secrets.TEST_MESSI_MODEL_PATH }}"
TEST_MESSI_HEADER_QUANTILES_PATH: "${{ secrets.TEST_MESSI_HEADER_QUANTILES_PATH }}"
TEST_MESSI_FEATURE_QUANTILES_PATH: "${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}"
TEST_TORETTO_MODEL_PATH: "${{ secrets.TEST_TORETTO_MODEL_PATH }}"
TEST_BARNEY_MODEL_PATH: "${{ secrets.TEST_BARNEY_MODEL_PATH }}"
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26 changes: 12 additions & 14 deletions .github/workflows/lc_classification_step.yaml
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Expand Up @@ -26,7 +26,6 @@ jobs:
TEST_BALTO_MODEL_PATH: "${{ secrets.TEST_BALTO_MODEL_PATH }}"
TEST_BALTO_QUANTILES_PATH: "${{ secrets.TEST_BALTO_QUANTILES_PATH }}"
TEST_MESSI_MODEL_PATH: "${{ secrets.TEST_MESSI_MODEL_PATH }}"
TEST_MESSI_HEADER_QUANTILES_PATH: "${{ secrets.TEST_MESSI_HEADER_QUANTILES_PATH }}"
TEST_MESSI_FEATURE_QUANTILES_PATH: "${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}"
TEST_TORETTO_MODEL_PATH: "${{ secrets.TEST_TORETTO_MODEL_PATH }}"
TEST_MLP_MODEL_PATH: "${{ secrets.TEST_MLP_MODEL_PATH }}"
Expand All @@ -47,19 +46,18 @@ jobs:
test-folder: "tests/integration"
secrets:
GH_TOKEN: ${{ secrets.ADMIN_TOKEN }}
TEST_BALTO_MODEL_PATH: "${{ secrets.TEST_BALTO_MODEL_PATH }}"
TEST_BALTO_QUANTILES_PATH: "${{ secrets.TEST_BALTO_QUANTILES_PATH }}"
TEST_MESSI_MODEL_PATH: "${{ secrets.TEST_MESSI_MODEL_PATH }}"
TEST_MESSI_HEADER_QUANTILES_PATH: "${{ secrets.TEST_MESSI_HEADER_QUANTILES_PATH }}"
TEST_MESSI_FEATURE_QUANTILES_PATH: "${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}"
TEST_TORETTO_MODEL_PATH: "${{ secrets.TEST_TORETTO_MODEL_PATH }}"
TEST_MLP_MODEL_PATH: "${{ secrets.TEST_MLP_MODEL_PATH }}"
TEST_ANOMALY_QUANTILES_PATH: "${{ secrets.TEST_ANOMALY_QUANTILES_PATH }}"
TEST_ANOMALY_MODEL_PATH: "${{ secrets.TEST_ANOMALY_MODEL_PATH }}"
TEST_MBAPPE_MODEL_PATH: "${{ secrets.TEST_MBAPPE_MODEL_PATH }}"
TEST_MBAPPE_FEATURES_QUANTILES_PATH: "${{ secrets.TEST_MBAPPE_FEATURES_QUANTILES_PATH }}"
TEST_MBAPPE_METADATA_QUANTILES_PATH: "${{ secrets.TEST_MBAPPE_METADATA_QUANTILES_PATH }}"
TEST_SQUIDWARD_MODEL_PATH: "${{ secrets.TEST_SQUIDWARD_MODEL_PATH }}"
TEST_BALTO_MODEL_PATH: ${{ secrets.TEST_BALTO_MODEL_PATH }}
TEST_BALTO_QUANTILES_PATH: ${{ secrets.TEST_BALTO_QUANTILES_PATH }}
TEST_MESSI_MODEL_PATH: ${{ secrets.TEST_MESSI_MODEL_PATH }}
TEST_MESSI_FEATURE_QUANTILES_PATH: ${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}
TEST_TORETTO_MODEL_PATH: ${{ secrets.TEST_TORETTO_MODEL_PATH }}
TEST_MLP_MODEL_PATH: ${{ secrets.TEST_MLP_MODEL_PATH }}
TEST_ANOMALY_QUANTILES_PATH: ${{ secrets.TEST_ANOMALY_QUANTILES_PATH }}
TEST_ANOMALY_MODEL_PATH: ${{ secrets.TEST_ANOMALY_MODEL_PATH }}
TEST_MBAPPE_MODEL_PATH: ${{ secrets.TEST_MBAPPE_MODEL_PATH }}
TEST_MBAPPE_FEATURES_QUANTILES_PATH: ${{ secrets.TEST_MBAPPE_FEATURES_QUANTILES_PATH }}
TEST_MBAPPE_METADATA_QUANTILES_PATH: ${{ secrets.TEST_MBAPPE_METADATA_QUANTILES_PATH }}
TEST_SQUIDWARD_MODEL_PATH: ${{ secrets.TEST_SQUIDWARD_MODEL_PATH }}

build-lc-classification-balto-dagger:
uses: ./.github/workflows/template_build_with_dagger.yaml
Expand Down
20 changes: 4 additions & 16 deletions .github/workflows/poetry-tests-template.yaml
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Expand Up @@ -43,21 +43,12 @@ on:
TEST_MESSI_MODEL_PATH:
required: false
description: 'A path to a .pt file'
TEST_MESSI_HEADER_QUANTILES_PATH:
required: false
description: 'A path to the directory containing joblib files for messi'
TEST_MESSI_FEATURE_QUANTILES_PATH:
required: false
description: 'A path to the directory containing joblib files for messi'
TEST_TORETTO_MODEL_PATH:
required: false
description: 'A path to a .pkl file'
TEST_BARNEY_MODEL_PATH:
required: false
description: 'A path to a .pkl file'
TEST_NEW_BARNEY_MODEL_PATH:
required: false
description: 'A path to a .pkl file'
TEST_MLP_MODEL_PATH:
required: false
description: 'A path to a .pkl file'
Expand Down Expand Up @@ -87,18 +78,15 @@ jobs:
TEST_BALTO_MODEL_PATH: ${{ secrets.TEST_BALTO_MODEL_PATH }}
TEST_BALTO_QUANTILES_PATH: ${{ secrets.TEST_BALTO_QUANTILES_PATH }}
TEST_MESSI_MODEL_PATH: ${{ secrets.TEST_MESSI_MODEL_PATH }}
TEST_MESSI_HEADER_QUANTILES_PATH: ${{ secrets.TEST_MESSI_HEADER_QUANTILES_PATH }}
TEST_MESSI_FEATURE_QUANTILES_PATH: ${{ secrets.TEST_MESSI_FEATURE_QUANTILES_PATH }}
TEST_TORETTO_MODEL_PATH: ${{ secrets.TEST_TORETTO_MODEL_PATH }}
TEST_BARNEY_MODEL_PATH: ${{ secrets.TEST_BARNEY_MODEL_PATH }}
TEST_NEW_BARNEY_MODEL_PATH: ${{ secrets.TEST_NEW_BARNEY_MODEL_PATH }}
TEST_MLP_MODEL_PATH: ${{ secrets.TEST_MLP_MODEL_PATH }}
TEST_ANOMALY_QUANTILES_PATH: ${{ secrets.TEST_ANOMALY_QUANTILES_PATH }}
TEST_ANOMALY_MODEL_PATH: ${{ secrets.TEST_ANOMALY_MODEL_PATH }}
TEST_MBAPPE_MODEL_PATH: "${{ secrets.TEST_MBAPPE_MODEL_PATH }}"
TEST_MBAPPE_FEATURES_QUANTILES_PATH: "${{ secrets.TEST_MBAPPE_FEATURES_QUANTILES_PATH }}"
TEST_MBAPPE_METADATA_QUANTILES_PATH: "${{ secrets.TEST_MBAPPE_METADATA_QUANTILES_PATH }}"
TEST_SQUIDWARD_MODEL_PATH: "${{ secrets.TEST_SQUIDWARD_MODEL_PATH }}"
TEST_MBAPPE_MODEL_PATH: ${{ secrets.TEST_MBAPPE_MODEL_PATH }}
TEST_MBAPPE_FEATURES_QUANTILES_PATH: ${{ secrets.TEST_MBAPPE_FEATURES_QUANTILES_PATH }}
TEST_MBAPPE_METADATA_QUANTILES_PATH: ${{ secrets.TEST_MBAPPE_METADATA_QUANTILES_PATH }}
TEST_SQUIDWARD_MODEL_PATH: ${{ secrets.TEST_SQUIDWARD_MODEL_PATH }}
steps:
- name: Check out repository code
uses: actions/checkout@v4
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/stamp_classifier_step.yaml
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Expand Up @@ -41,7 +41,7 @@ jobs:
secrets:
GH_TOKEN: ${{ secrets.ADMIN_TOKEN }}

stamp_classifiier_step_integration:
stamp_classifier_step_integration:
uses: ./.github/workflows/pip-tests-template.yaml
with:
base-folder: 'stamp_classifier_step'
Expand Down
6 changes: 6 additions & 0 deletions correction_step/tests/integration/conftest.py
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Expand Up @@ -13,6 +13,12 @@
from tests.utils import atlas_extra_fields, lsst_extra_fields, ztf_extra_fields


@pytest.fixture(scope="session")
def docker_compose_command():
version = os.getenv("COMPOSE", "v2")
return "docker compose" if version == "v2" else "docker-compose"


@pytest.fixture(scope="session")
def docker_compose_file(pytestconfig):
return (pathlib.Path(pytestconfig.rootdir) / "tests/integration/docker-compose.yaml").absolute()
Expand Down
2 changes: 1 addition & 1 deletion early_classification_step/model/requirements.txt
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@@ -1,7 +1,7 @@
ephem==3.7.7.0
absl-py==0.7.1
astor==0.8.0
astropy==3.2.1
astropy~=4.0
bleach==3.1.0
certifi==2019.6.16
chardet==3.0.4
Expand Down
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