Merge pull request #38 from aineniamh/prior-to-reversion #39

	name: snipit
	on: [push, pull_request]
	defaults:
	run:
	shell: bash -l {0}

	jobs:
	run_snipit_test:
	name: snipit test on ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: ["ubuntu-latest", "macos-latest"]
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.x'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip && pip install --upgrade setuptools
	- name: Display Python version
	run: python -c "import sys; print(sys.version)"
	- name: Install snipit
	run: pip3 install -e .
	- name: Check snipit version
	run: snipit --version
	- name: Run snipit with test data
	run: snipit docs/test_2.fasta \| tee snipit.log
	- name: Run snipit output snps
	run: snipit docs/test_2.fasta -s \| tee snipit_snps.log

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