Dependencies: Fix incompatibility with spglib>=2.3 (#6266)

The `spglib` library deprecated support for `ase.Atoms` objects a long
time ago and it was finally removed in the v2.3 release. However, the
`aiida.orm.nodes.data.structure.ase_refine_cell` function was still
using the deprecated functionality. The `Atoms` objects are now replaced
with the plain tuples that `spglib` expects.

src/aiida/orm/nodes/data/structure.py

@@ -595,18 +595,26 @@ def ase_refine_cell(aseatoms, **kwargs):
     from ase.atoms import Atoms
     from spglib import get_symmetry_dataset, refine_cell
 
-    cell, positions, numbers = refine_cell(aseatoms, **kwargs)
-
-    refined_atoms = Atoms(numbers, scaled_positions=positions, cell=cell, pbc=True)
+    spglib_tuple = (
+        aseatoms.get_cell(),
+        aseatoms.get_scaled_positions(),
+        aseatoms.get_atomic_numbers(),
+    )
+    cell, positions, numbers = refine_cell(spglib_tuple, **kwargs)
 
+    refined_atoms = (
+        cell,
+        positions,
+        numbers,
+    )
     sym_dataset = get_symmetry_dataset(refined_atoms, **kwargs)
 
     unique_numbers = []
     unique_positions = []
 
     for i in set(sym_dataset['equivalent_atoms']):
-        unique_numbers.append(refined_atoms.numbers[i])
-        unique_positions.append(refined_atoms.get_scaled_positions()[i])
+        unique_numbers.append(numbers[i])
+        unique_positions.append(positions[i])
 
     unique_atoms = Atoms(unique_numbers, scaled_positions=unique_positions, cell=cell, pbc=True)