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XyData
: Allow defining array(s) on construction
Currently, the constructor does not allow to define any arrays to set when constructing a new node, so one is forced to multi line code: node = XyData() node.set_x(np.array([1, 2]), 'name', unit') node.set_y(np.array([3, 4]), 'name', unit') This commit allows initialization upon construction simplifying the code above to: node = XyData( np.array([1, 2]), np.array([3, 4]), x_name='name', x_unit='unit', y_names='name', y_units='unit' ) The units and names are intentionally made into keyword argument only in order to prevent accidental swapping of values. For backwards compatibility, it remains possible to construct an `XyData` without any arrays.
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# -*- coding: utf-8 -*- | ||
########################################################################### | ||
# Copyright (c), The AiiDA team. All rights reserved. # | ||
# This file is part of the AiiDA code. # | ||
# # | ||
# The code is hosted on GitHub at https://github.com/aiidateam/aiida-core # | ||
# For further information on the license, see the LICENSE.txt file # | ||
# For further information please visit http://www.aiida.net # | ||
########################################################################### | ||
"""Tests for the :mod:`aiida.orm.nodes.data.array.xy` module.""" | ||
import numpy | ||
import pytest | ||
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from aiida.common.exceptions import NotExistent | ||
from aiida.orm import XyData, load_node | ||
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def test_read_stored(): | ||
"""Test reading an array from an ``XyData`` after storing and loading it.""" | ||
x_array = numpy.array([1, 2]) | ||
y_array = numpy.array([3, 4]) | ||
node = XyData(x_array, y_array, x_name='x_name', x_units='x_unit', y_names='y_name', y_units='y_units') | ||
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assert numpy.array_equal(node.get_x()[1], x_array) | ||
assert numpy.array_equal(node.get_y()[0][1], y_array) | ||
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node.store() | ||
assert numpy.array_equal(node.get_x()[1], x_array) | ||
assert numpy.array_equal(node.get_y()[0][1], y_array) | ||
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loaded = load_node(node.uuid) | ||
assert numpy.array_equal(loaded.get_x()[1], x_array) | ||
assert numpy.array_equal(loaded.get_y()[0][1], y_array) | ||
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def test_constructor(): | ||
"""Test the various construction options.""" | ||
with pytest.raises(TypeError): | ||
node = XyData(numpy.array([1, 2])) | ||
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node = XyData() | ||
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with pytest.raises(NotExistent): | ||
node.get_x() | ||
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with pytest.raises(NotExistent): | ||
node.get_y() | ||
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x_array = numpy.array([1, 2]) | ||
y_array = numpy.array([3, 4]) | ||
node = XyData(x_array, y_array, x_name='x_name', x_units='x_unit', y_names='y_name', y_units='y_units') | ||
assert numpy.array_equal(node.get_x()[1], x_array) | ||
assert numpy.array_equal(node.get_y()[0][1], y_array) |