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Updated container files for 0.9.18
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cflerin committed Sep 26, 2019
1 parent affb1d8 commit e5f9b7c
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2 changes: 1 addition & 1 deletion Singularity
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ From: python:3.7.4-slim
apt-get install -y $BUILDPKGS

pip install --no-cache-dir -r /tmp/requirements_docker.txt
pip install --no-cache-dir --upgrade pyscenic==0.9.16
pip install --no-cache-dir --upgrade pyscenic==0.9.18
pip install --no-cache-dir scanpy==1.4.4.post1

apt-get remove --purge -y $BUILDPKGS && \
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24 changes: 24 additions & 0 deletions Singularity.0.9.18
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@@ -0,0 +1,24 @@
BootStrap: docker
From: python:3.7.4-slim

%files
./requirements_docker.txt /tmp/

%post
BUILDPKGS="build-essential apt-utils \
python3-dev libhdf5-dev libfreetype6-dev libtool \
m4 autoconf automake patch bison flex libpng-dev libopenblas-dev \
tcl-dev tk-dev libxml2-dev zlib1g-dev libffi-dev cmake"
apt-get update
apt-get install -y debconf locales && dpkg-reconfigure locales
apt-get install -y zlib1g hdf5-tools gfortran libgcc1 libstdc++6 musl \
libopenblas-base tcl tk libxml2 libffi6 less procps
apt-get install -y $BUILDPKGS

pip install --no-cache-dir -r /tmp/requirements_docker.txt
pip install --no-cache-dir --upgrade pyscenic==0.9.18
pip install --no-cache-dir scanpy==1.4.4.post1

apt-get remove --purge -y $BUILDPKGS && \
rm -rf /var/lib/apt/lists/*

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