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BootStrap: docker | ||
From: python:3.7.4-slim | ||
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%files | ||
./requirements_docker.txt /tmp/ | ||
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%post | ||
BUILDPKGS="build-essential apt-utils \ | ||
python3-dev libhdf5-dev libfreetype6-dev libtool \ | ||
m4 autoconf automake patch bison flex libpng-dev libopenblas-dev \ | ||
tcl-dev tk-dev libxml2-dev zlib1g-dev libffi-dev cmake" | ||
apt-get update | ||
apt-get install -y debconf locales && dpkg-reconfigure locales | ||
apt-get install -y zlib1g hdf5-tools gfortran libgcc1 libstdc++6 musl \ | ||
libopenblas-base tcl tk libxml2 libffi6 less procps | ||
apt-get install -y $BUILDPKGS | ||
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pip install --no-cache-dir -r /tmp/requirements_docker.txt | ||
pip install --no-cache-dir --upgrade pyscenic==0.9.18 | ||
pip install --no-cache-dir scanpy==1.4.4.post1 | ||
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apt-get remove --purge -y $BUILDPKGS && \ | ||
rm -rf /var/lib/apt/lists/* | ||
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