Fix bug where the GRN CLI step would not compress the output if the file

had a gz ending.
aertslab · Jun 11, 2020 · aa577d5 · aa577d5
1 parent 6e3ca77
commit aa577d5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/pyscenic/cli/pyscenic.py b/src/pyscenic/cli/pyscenic.py
@@ -78,7 +78,7 @@ def find_adjacencies_command(args):
     LOGGER.info("Writing results to file.")
 
     extension = PurePath(args.output.name).suffixes
-    network.to_csv(args.output, index=False, sep=suffixes_to_separator(extension))
+    network.to_csv(args.output.name, index=False, sep=suffixes_to_separator(extension))
 
 
 def adjacencies2modules(args):