pySCENIC depends on latest version of loompy package.

aertslab · May 10, 2019 · 320f66c · 320f66c
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commit 320f66c
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/requirements.notebooks.txt b/requirements.notebooks.txt
@@ -17,6 +17,6 @@ pyyaml
 tqdm
 interlap
 umap-learn
-loompy==2.0.2
+loompy
 networkx
 matplotlib
diff --git a/requirements.txt b/requirements.txt
@@ -17,5 +17,5 @@ pyyaml
 tqdm
 interlap
 umap-learn
-loompy==2.0.2
+loompy
 networkx
diff --git a/src/pyscenic/cli/utils.py b/src/pyscenic/cli/utils.py
@@ -268,7 +268,7 @@ def create_structure_array(df):
         return np.array([tuple(row) for row in df.values],
                         dtype=np.dtype(list(zip(df.columns, df.dtypes))))
 
-    with lp.connect(fname) as ds:
+    with lp.connect(fname, validate=False) as ds:
         # The orientation of the loom file is always:
         #   - Columns represent cells or aggregates of cells
         # 	- Rows represent genes