Here, we use RF, SPORF, SRerf, and MTMORF to analyze the neural data of subjects in a motor task.
We require the following packages to run experiments:
numpy
scipy
scikit-learn
mlxtend
pingouin
mne
mne-bids
pybv
joblib
tqdm
matplotlib
seaborn
rerf # built locally
Use pipenv with a virtual environment.
# create venv here if not alreayd made
python3.8 -m venv .venv
# install dev packages
pipenv install --dev
# if dev versions are needed
pipenv install https://api.github.com/repos/mne-tools/mne-bids/zipball/master
# make packedForest
cd ../packedForest
make
# pip install into venv
cd ../Python
pipenv run pip install -e .
It is recommended to use a conda environment and then follow the instructions on the installation instructions.