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- Add new '--extract-ref-flanks' option for AssemblyMapper, which allow chimeric contig output for gap filling. (see issue #42 for detail)
- Add new '--extract-ref-flanks' option for AssemblyMapper, which allow chimeric contig output for gap filling. (see [issue #42](https://github.com/aaranyue/quarTeT/issues/42) for detail)
- Support Unimap as aligner. As a optimized version of minimap2, it still use the '--minimapoption'.
- Fix a bug that monopolizer contig length standard is too high.
- Deprecate the web server for maintenance issue (sorry!).
Expand All
@@ -35,7 +35,7 @@ Task include:
- Support RepeatMasker's TE annotation format for CentroMiner module.
1.1.6
- add new option 'maximum TR length' (-r) for CentroMiner to avoid trf stuck. (Thanks to atotickov, PR #22)
- add new option 'maximum TR length' (-r) for CentroMiner to avoid trf stuck. (Thanks to atotickov, [PR #22](https://github.com/aaranyue/quarTeT/pull/22))
- disable unstable 'join' mode for GapFiller by default. Use '--enablejoin' option to enable this mode. '--fillonly' option is removed.
