Skip to content

Commit

Permalink
Update zfa-edit.obo
Browse files Browse the repository at this point in the history
Added early palate and related changes
Added and updated defs
  • Loading branch information
cerivs committed Nov 21, 2023
1 parent 5d5bd88 commit 16f939d
Showing 1 changed file with 22 additions and 5 deletions.
27 changes: 22 additions & 5 deletions src/ontology/zfa-edit.obo
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
date: 29:11:2022 16:29
date: 21:11:2023 14:46
saved-by: zfinf
auto-generated-by: OBO-Edit 2.3-beta5
subsetdef: cell_slim "cell_slim"
Expand Down Expand Up @@ -7203,6 +7203,7 @@ relationship: start ZFS:0000000 ! unknown
id: ZFA:0000608
name: ventral transverse
namespace: zebrafish_anatomy
def: "Ventral branchial muscle that runs diagonally from near the horizontal midline at the caudal end caudal to the ventral side at the rostral end. The ventral transverse muscles are paired and there is a pair in each branchial arch." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13]
synonym: "transverse ventralis" EXACT []
synonym: "transversus ventralis" EXACT []
xref: TAO:0000608
Expand Down Expand Up @@ -16464,6 +16465,7 @@ is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000042 ! juvenile:days 30-44
relationship: part_of ZFA:0000351 ! olfactory region
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005958 ! early palate
relationship: start ZFS:0000033 ! hatching:long-pec

[Term]
Expand Down Expand Up @@ -17664,9 +17666,10 @@ def: "Paired thin medially aligned bar of cartilage that extends from the anteri
synonym: "trabeculae cranii" EXACT OMO:0003004 []
xref: TAO:0001507
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001321 ! neurocranial trabecula
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005958 ! early palate
relationship: start ZFS:0000032 ! pharyngula:high-pec

[Term]
Expand All @@ -17677,9 +17680,10 @@ def: "Cartilage formed via medial fusion between bilaterally paired trabecula cr
synonym: "trabecular bar" EXACT []
xref: TAO:0001508
is_a: ZFA:0001461 ! chondrocranium cartilage
relationship: end ZFS:0000044 ! adult
relationship: end ZFS:0000000 ! unknown
relationship: part_of ZFA:0001321 ! neurocranial trabecula
relationship: part_of ZFA:0001580 ! neurocranium
relationship: part_of ZFA:0005958 ! early palate
relationship: start ZFS:0000000 ! unknown

[Term]
Expand Down Expand Up @@ -18501,6 +18505,7 @@ name: neurocranium
namespace: zebrafish_anatomy
def: "Anatomical cluster that is the regional skeletal system surrounding the brain." [GOC:mh, ORCiD:0000-0001-9114-8737]
synonym: "braincase" EXACT []
synonym: "palatal skeleton" RELATED [ZFIN:ZDB-PUB-201027-4]
xref: TAO:0001580
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000044 ! adult
Expand Down Expand Up @@ -21663,7 +21668,7 @@ relationship: start ZFS:0000030 ! pharyngula:prim-15
id: ZFA:0005112
name: dorsal lateral line
namespace: zebrafish_anatomy
def: "One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34]
def: "One of eight distinct lateral lines in the 4-day larva. The dorsal lateral line runs along the dorsal side of the body and never extends beyond the dorsal fin. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34]
synonym: "dorsal lateral lines" EXACT OMO:0003004 []
xref: TAO:0005112
is_a: ZFA:0001469 ! lateral line
Expand Down Expand Up @@ -32557,6 +32562,18 @@ relationship: start ZFS:0000000 ! unknown
created_by: ceriv
creation_date: 2021-08-13T13:47:16Z

[Term]
id: ZFA:0005958
name: early palate
namespace: zebrafish_anatomy
def: "The cartilage which make up the anterior neurocranium that forms the roof of the oral cavity during pharyngeal and early larval stages. This cluster is used to model the mammalian palate." [GOC:CVS, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-151122-6]
is_a: ZFA:0001478 ! anatomical cluster
relationship: end ZFS:0000042 ! juvenile:days 30-44
relationship: part_of ZFA:0001580 ! neurocranium
relationship: start ZFS:0000031 ! pharyngula:prim-25
created_by: ceriv
creation_date: 2023-06-09T09:20:28Z

[Term]
id: ZFA:0006000
name: intermediate hypothalamus
Expand Down Expand Up @@ -40040,8 +40057,8 @@ is_symmetric: true
id: develops_from
name: develops from
xref: RO:0002202
holds_over_chain: part_of develops_from
is_transitive: true
holds_over_chain: part_of develops_from
transitive_over: part_of ! part of

[Typedef]
Expand Down

0 comments on commit 16f939d

Please sign in to comment.