ref: cleanup (default arguments and PyQt5 object references)

CHANGELOG

@@ -1,5 +1,6 @@
 2.6.7
  - fix: correctly handle missing features on data export (#80)
+ - ref: cleanup (default arguments and PyQt5 object references)
  - setup: bump dclab from 0.34.2 to 0.34.3 (set R_HOME)
  - build: bumpy rpy2 from 3.4.2 to 3.4.5
  - build: bumpy pyqtgraph from 0.12.1 to 0.12.2 and remove

shapeout2/gui/compute/comp_lme4.py

@@ -39,18 +39,18 @@ def __init__(self, parent, pipeline, *args, **kwargs):
         self.update()
 
         # button signals
-        btn_close = self.buttonBox.button(QtGui.QDialogButtonBox.Close)
+        btn_close = self.buttonBox.button(QtWidgets.QDialogButtonBox.Close)
         btn_close.clicked.connect(self.on_close)
         btn_close.setToolTip("Close this dialog")
         closeicon = QtGui.QIcon.fromTheme("dialog-close")
         btn_close.setIcon(closeicon)
-        btn_openlme4 = self.buttonBox.button(QtGui.QDialogButtonBox.Apply)
+        btn_openlme4 = self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply)
         btn_openlme4.clicked.connect(self.on_lme4)
         btn_openlme4.setToolTip("Perform lme4 analysis")
         btn_openlme4.setText("Run R-lme4")
         picon = QtGui.QIcon.fromTheme("rlang")
         btn_openlme4.setIcon(picon)
-        btn_help = self.buttonBox.button(QtGui.QDialogButtonBox.Help)
+        btn_help = self.buttonBox.button(QtWidgets.QDialogButtonBox.Help)
         btn_help.clicked.connect(self.on_help)
         btn_help.setToolTip("View R-lme4 Quick Guide online")
         helpicon = QtGui.QIcon.fromTheme("documentinfo")

shapeout2/gui/compute/comp_lme4_results.py

@@ -62,12 +62,12 @@ def __init__(self, parent, rlme4_results, *args, **kwargs):
         self.plainTextEdit.setPlainText("\n".join(summary))
 
         # button signals
-        btn_close = self.buttonBox.button(QtGui.QDialogButtonBox.Close)
+        btn_close = self.buttonBox.button(QtWidgets.QDialogButtonBox.Close)
         btn_close.clicked.connect(self.on_close)
         btn_close.setToolTip("Close this dialog")
         closeicon = QtGui.QIcon.fromTheme("dialog-close")
         btn_close.setIcon(closeicon)
-        btn_openlme4 = self.buttonBox.button(QtGui.QDialogButtonBox.Apply)
+        btn_openlme4 = self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply)
         btn_openlme4.clicked.connect(self.on_save)
         btn_openlme4.setToolTip("Save report as text file")
         btn_openlme4.setText("Save report (.txt)")

shapeout2/gui/dcor/__init__.py

@@ -42,18 +42,18 @@ def __init__(self, parent, *args, **kwargs):
         self.search_item_retrieved.connect(self.on_search_add_result)
 
         # button signals
-        btn_close = self.buttonBox.button(QtGui.QDialogButtonBox.Close)
+        btn_close = self.buttonBox.button(QtWidgets.QDialogButtonBox.Close)
         btn_close.clicked.connect(self.on_close)
         btn_close.setToolTip("Close this window")
         closeicon = QtGui.QIcon.fromTheme("dialog-close")
         btn_close.setIcon(closeicon)
-        btn_open = self.buttonBox.button(QtGui.QDialogButtonBox.Apply)
+        btn_open = self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply)
         btn_open.clicked.connect(self.on_open)
         btn_open.setToolTip("Add selected resources to current session")
         btn_open.setText("Add to session")
         plusicon = QtGui.QIcon.fromTheme("list-add")
         btn_open.setIcon(plusicon)
-        btn_help = self.buttonBox.button(QtGui.QDialogButtonBox.Help)
+        btn_help = self.buttonBox.button(QtWidgets.QDialogButtonBox.Help)
         btn_help.clicked.connect(self.on_help)
         btn_help.setToolTip("View DCOR Quick Guide online")
         helpicon = QtGui.QIcon.fromTheme("documentinfo")

shapeout2/gui/quick_view/qv_scatter.py

@@ -43,7 +43,9 @@ def __init__(self, *args, **kwargs):
         # let view box update self.poly_line_roi
         self._view_box.add_poly_vertex.connect(self.add_poly_vertex)
 
-    def activate_poly_mode(self, points=[]):
+    def activate_poly_mode(self, points=None):
+        if points is None:
+            points = []
         if self.poly_line_roi is None:
             self.poly_line_roi = pg.PolyLineROI([], closed=True)
             self.poly_line_roi.setPen("k")

shapeout2/plot_cache.py

@@ -3,7 +3,9 @@
 
 
 def get_contour_data(rtdc_ds, xax, yax, xacc, yacc, xscale, yscale,
-                     kde_type="histogram", kde_kwargs={}):
+                     kde_type="histogram", kde_kwargs=None):
+    if kde_kwargs is None:
+        kde_kwargs = {}
     rtdc_ds.apply_filter()
     cfg = rtdc_ds.config
     tohash = [
@@ -31,7 +33,9 @@ def get_contour_data(rtdc_ds, xax, yax, xacc, yacc, xscale, yscale,
 
 
 def get_scatter_data(rtdc_ds, downsample, xax, yax, xscale, yscale,
-                     kde_type="histogram", kde_kwargs={}):
+                     kde_type="histogram", kde_kwargs=None):
+    if kde_kwargs is None:
+        kde_kwargs = {}
     rtdc_ds.apply_filter()
     cfg = rtdc_ds.config
     tohash = [

shapeout2/session.py

@@ -15,9 +15,9 @@
 
 
 class DataFileNotFoundError(BaseException):
-    def __init__(self, missing_paths, *args, **kwargs):
+    def __init__(self, missing_paths, *args):
         self.missing_paths = missing_paths
-        super(DataFileNotFoundError, self).__init__(*args, **kwargs)
+        super(DataFileNotFoundError, self).__init__(*args)
 
 
 class PathlibJSONEncoder(json.JSONEncoder):
@@ -84,7 +84,7 @@ def import_filters(path, pipeline, strict=False):
 
     Parameters
     ----------
-    path: pathlib.Path or str
+    path: pathlib.Path or str or io.IOBase
         Path to the filter file
     pipeline: shapeout2.pipeline.Pipeline
         Analysis pipeline to import filters to
@@ -292,7 +292,7 @@ def find_file(original_path, search_paths, partial_hash, size_read):
     return path
 
 
-def open_session(path, pipeline=None, search_paths=[]):
+def open_session(path, pipeline=None, search_paths=None):
     """Load a session (optionally overriding an existing pipeline)
 
     Parameters
@@ -305,6 +305,8 @@ def open_session(path, pipeline=None, search_paths=[]):
         Paths to search for missing measurements; entries may be
         directories or .rtdc files
     """
+    if search_paths is None:
+        search_paths = []
     path = pathlib.Path(path)
     if pipeline is None:
         pipeline = Pipeline()