update conf file

docs/conf.py

@@ -48,17 +48,20 @@
 # They can be extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = [
     "myst_nb",
-    "sphinx_copybutton",
     "sphinx.ext.autodoc",
     "sphinx.ext.intersphinx",
-    "sphinx.ext.autosummary",
+    "sphinx.ext.linkcode",
+    "sphinx.ext.mathjax",
     "sphinx.ext.napoleon",
+    "sphinx_autodoc_typehints",  # needs to be after napoleon
+    "sphinx.ext.extlinks",
+    "sphinx.ext.autosummary",
     "sphinxcontrib.bibtex",
-    "sphinx_autodoc_typehints",
-    "sphinx.ext.mathjax",
-    "IPython.sphinxext.ipython_console_highlighting",
-    "sphinxext.opengraph",
     *[p.stem for p in (HERE / "extensions").glob("*.py")],
+    "sphinx_copybutton",
+    "sphinx_design",
+    "sphinxext.opengraph",
+    "hoverxref.extension",
 ]
 
 autosummary_generate = True

pyproject.toml

@@ -51,18 +51,18 @@ dev = [
     "twine>=4.0.2"
 ]
 doc = [
-    "docutils>=0.8,!=0.18.*,!=0.19.*",
-    "sphinx>=4",
-    "sphinx-book-theme>=1.0.0",
-    "myst-nb",
+    "docutils>=0.8,!=0.18.*,!=0.19.*", # see https://github.com/scverse/cookiecutter-scverse/pull/205
+    "sphinx>=4.1",
+    "ipython",
+    "sphinx-book-theme>=1.0.1",
+    "sphinx_copybutton",
+    "sphinx-design",
+    "sphinxext-opengraph",
+    "sphinx-hoverxref",
     "sphinxcontrib-bibtex>=1.0.0",
+    "myst-parser",
+    "myst-nb",
     "sphinx-autodoc-typehints",
-    "sphinxext-opengraph",
-    # For notebooks
-    "ipykernel",
-    "ipython",
-    "sphinx-copybutton",
-    "pandas",
 ]
 test = [
     "pytest",