Evolutionary coupling #154
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov Report
@@ Coverage Diff @@
## master #154 +/- ##
==========================================
+ Coverage 87.09% 87.13% +0.03%
==========================================
Files 70 71 +1
Lines 4821 4880 +59
==========================================
+ Hits 4199 4252 +53
- Misses 622 628 +6
Continue to review full report at Codecov.
|
Lioscro
requested changes
Nov 10, 2021
…evolutionary_coupling
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Implements the Evolutionary Coupling statistic.
The main logic is stored in
cassiopeia/tools/coupling.pywhich in the future can store other methods for computing the "couplings" between variables.Auxiliary functionality is implemented in
cassiopeia/data/utilities.pyfor computing distances between categories.This will work towards resolving #149