added ecDNA simulator to user guide

YosefLab · Apr 14, 2024 · bffa6c0 · bffa6c0
1 parent 189538e
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/docs/conf.py b/docs/conf.py
@@ -165,6 +165,7 @@
     "notebooks/benchmark": "_static/tutorials/benchmark.png",
     "notebooks/reconstruct": "_static/tutorials/reconstruct.png",
     "notebooks/local_plotting": "_static/tutorials/local_plotting.png",
+    "notebooks/simulate_ecDNA": "_static/tutorials/local_plotting.png"
 }
 
 

diff --git a/docs/user_guide.rst b/docs/user_guide.rst
@@ -5,7 +5,7 @@ Cassiopeia is a flexible tool for analyzing lineage-tracing data and benchmarkin
 
 For any questions about Cassiopeia, please file an issue on `Github <https://github.com/YosefLab/Cassiopeia/issues>`_. If you'd like to contribute a tutorial or a new algorithm, please follow our :doc:`Contributing guide<contributing>`.
 
-Tutorials
+Main Tutorials
 -----------
 
 .. nbgallery::
@@ -14,6 +14,13 @@ Tutorials
    notebooks/benchmark
    notebooks/reconstruct
    notebooks/local_plotting
+
+
+Other Tutorials
+-----------------
+
+.. toctree::
+
    notebooks/simulate_ecDNA
 
 Contributed tutorials