v2.0.0-beta3
Pre-release
Pre-release
·
12 commits
to dev
since this release
What's Changed
DRAM v2 is wrapped in Nextflow due to its innate scalability on HPCs and containerization, ensuring rigorous reproducibility and version control, thus making it ideally suited for high-performance computing environments. It was also containerized to give users the option to use with Docker, Singularity or other container runtimes, or still with Conda. Databases have also now been largely preformatted for users. All of this is part of the goal making DRAM easier to install and use, as well as easier to scale.
Pre Beta
- Nextflow initial wrapping
- DRAM package restructuring for Nextflow
- Database preformatting changes
- Containerization
Previous Betas from old repo
Beta 1
- Removed hard-coded slurm node and slurm_queue in nextflow.config by @BioRRW in WrightonLabCSU/DRAM2#1
- Dev by @BioRRW in #2 - WrightonLabCSU/DRAM2#13
- Visualizations/make product by @madeline-scyphers in WrightonLabCSU/DRAM2#12
- Dev by @BioRRW in WrightonLabCSU/DRAM2#14
- Visualizations/docstrings by @madeline-scyphers in WrightonLabCSU/DRAM2#15
- Add README to visualization package by @madeline-scyphers in WrightonLabCSU/DRAM2#16
- Viz/move viz to installable package by @madeline-scyphers in WrightonLabCSU/DRAM2#20
- Feature/kegg db formatting by @madeline-scyphers in WrightonLabCSU/DRAM2#23
- Package/add docker file by @madeline-scyphers in WrightonLabCSU/DRAM2#24
- Kegg formating, docker, visualization package, dev notes by @madeline-scyphers in WrightonLabCSU/DRAM2#19
Beta2
- Replace many ./ paths with using NF's projectDir variable by @madeline-scyphers in WrightonLabCSU/DRAM2#25
- Config/split config by @madeline-scyphers in WrightonLabCSU/DRAM2#26
- Update docs with new install instructions by @madeline-scyphers in WrightonLabCSU/DRAM2#27
Beta 3
- Move from DRAM2 name back to DRAM
- Moving DRAM Nextflow Configuration to split better between internal and user
New Contributors
- @jrr-microbio made their first contribution in #320
- @BioRRW made their first contribution in WrightonLabCSU/DRAM2#1
- @madeline-scyphers made their first contribution in #364
Full Changelog: v1.5.0...v2.0.0-beta3
Contributors
BioRRW, madeline-scyphers, and jrr-microbio