Code

Julia build in container#45

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Merged

tdivoll merged 72 commits intomainWilhelmusLab/ice-floe-tracker-pipeline:mainfrom feat-docker-buildWilhelmusLab/ice-floe-tracker-pipeline:feat-docker-buildCopy head branch name to clipboardAug 23, 2023

+57-36

Commits

Commits on Jul 21, 2023

• test: try build rather than instantiate

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• Merge branch 'main' into feat-docker-build

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Commits on Jul 24, 2023

• test: activate IFTPipeline module

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• test: activate IFTPipeline module

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• test: add quotes to module call

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• test: add quotes to module call

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• test: julia import IFTP

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• test: using IFTP

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• test: rearrange order of calls

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Commits on Jul 25, 2023

• test: add deliberate build for PyCall

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• test: copy script to opt

  

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• fix: path to copied script

  

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• fix: path to copied script

  

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• test: try cp to usr local bin

  

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• test: try cp to usr local bin

  

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• test: try cp to usr local bin

  

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• test: try cp to usr local bin

  

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• test: try full path for cp to usr local bin

  

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• test: switch order of cp

  

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• test: remove cp

  

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• fix: chmod path

  

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• fix: chmod path

  

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Commits on Jul 26, 2023

• feat: add arm64 platform to build

  

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• test: arm64 only build

  

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• fix: revert to amd64 only

  

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• test: update to julia 1.9.2-bookworm

  

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• fix: add extra update to include git

  

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• test: try setting depot path

  

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• test: try adding user as root to dockerfile

  

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• test: try chmod for julia-conda in container

  

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• test: try chmod for julia inside container for conda to add packages

  

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• test: try changing order of chmod commands

  

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Commits on Jul 27, 2023

• test: reorder chmod command

  

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Commits on Jul 31, 2023

• fix syntax in landmask task call

  

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• Merge branch 'main' into feat-docker-build

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• test: activate in script

  

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• test: soft link for julia inside container

  

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• test: try root user in container

  

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• test: add full path to julia for build

  

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• test: copy workflow dir to /tmp

  

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• test: turn off logging

  

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Commits on Aug 1, 2023

• test: copy cli script to tmp

  

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• test: copy cli script to local bin

  

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• fix: update all tasks with path to cli script

  

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• feat: add tasks to pull docker images

  

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Commits on Aug 7, 2023

• feat: update docker container for local

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Commits on Aug 16, 2023

• Merge branch 'main' into feat-docker-build

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• add pyproj and rasterio to container

  

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• set path to python

  

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• merge changes from pr-53

  

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• test: remove deliberate PyCall build from Dockerfile

  

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• update python path in Dockerfile

  

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Commits on Aug 17, 2023

• revert python path to default

  

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• Merge branch 'main' into feat-docker-build

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Commits on Aug 18, 2023

• test: make h5 dir outside rather than in container

  

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• test: rm py deps from container after IFT refactor

  

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Commits on Aug 21, 2023

• Merge branch '62-deprecate-getiftversion-in-favor-of-iftversion' into feat-docker-build

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• reset h5 script

  

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• Merge branch 'main' into feat-docker-build

  

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• feat: final cylc pipeline test in hpc

  

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• fix: indentation of tasks in flow file

  

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• fix: filename paths in makefilenames

  

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• fix: last path to fix for makefilenames

  

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Commits on Aug 22, 2023

• fix: revert julia commands to call from local julia install

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• fix: add project activation to last two cylc tasks

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• feat: add compat to project toml

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• docs: clean up line ending and missing readme

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• docs: add line ending

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• test: try logger now that binding paths are working

  

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Commits on Aug 23, 2023

• feat: add binding for logging report directory

  

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• fix: indentation error

  

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• Update config/cylc_hpc/flow.cylc

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