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Merge pull request #116 from WildMeOrg/dev-without-scoutbot
work on scout with example data (and no scoutbot)
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FROM ubuntu:20.04 | ||
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# Install apt packages | ||
RUN set -ex \ | ||
&& apt-get update \ | ||
&& DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \ | ||
python3-dev \ | ||
python3-pip \ | ||
libglib2.0-0 \ | ||
&& rm -rf /var/cache/apt \ | ||
&& rm -rf /var/lib/apt/lists/* | ||
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RUN apt-get -y update && \ | ||
apt-get -y install git && \ | ||
apt-get clean | ||
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RUN apt-get update -y | ||
RUN apt-get upgrade -y | ||
RUN apt-get install curl -y | ||
RUN curl -fsSL https://deb.nodesource.com/setup_16.x | bash | ||
RUN apt-get install nodejs -y | ||
RUN apt-get install wget -y | ||
RUN apt-get install gnupg -y | ||
RUN apt-get install mongodb -y | ||
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ENV DEBIAN_FRONTEND noninteractive | ||
RUN apt-get install graphicsmagick -y | ||
ENV DEBIAN_FRONTEND newt | ||
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RUN apt-get install dcraw -y | ||
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WORKDIR /usr/src/app | ||
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COPY package*.json ./ | ||
COPY . . | ||
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RUN mkdir /tmp/log | ||
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RUN mkdir /data | ||
COPY ./develop-with-data/example_data/db /data/db | ||
COPY ./develop-with-data/example_data/tmp /tmp/scout-tmp | ||
COPY ./develop-with-data/example_data/nas /tmp/nas | ||
# permissions are fussy when you run live code | ||
RUN ["chmod", "-R", "a+rwx", "/data/db"] | ||
RUN ["chmod", "-R", "a+rwx", "/tmp/nas"] | ||
RUN ["chmod", "-R", "a+rwx", "/tmp/scout-tmp"] | ||
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RUN npm cache clean --force | ||
RUN rm -rf node_modules | ||
RUN npm install | ||
RUN npm install sails -g | ||
RUN npm install [email protected] -g | ||
RUN npm install gm -g | ||
RUN npm install readline-sync --save | ||
RUN npm install connect-mongodb-session --save | ||
RUN npm install sails --save | ||
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EXPOSE 1337 | ||
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RUN ["chmod", "+x", "/usr/src/app/docker-entrypoint.sh"] | ||
CMD ["/usr/src/app/docker-entrypoint.sh"] |
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# Development | ||
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This `docker-compose.yml` file can be used to launch an instance of Scout for development purposes. | ||
It will use the repo root directory (up one level) to run the code "live", which allows for editing and | ||
testing code. | ||
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This docker image also comes with some **example data** which can be helpful in testing Scout development. | ||
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Also, this version of Scout **does not include scoutbot** and therefore does not require a GPU (and related setup | ||
overhead) to function. This also means, however, that it cannot process images with ML classifiers. | ||
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## One time setup | ||
From root of the code directory, run `npm install` to make sure all necessary libraries are installed. | ||
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## Usage | ||
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1. From this directory (`/develop-with-data`), run `docker-compose up` to fetch that docker image and run Scout. | ||
1. Once running, use a browser to open http://localhost:1337. Login with `admin`/`admin` as username/password. | ||
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## Troubleshooting | ||
- If you encounter a docker error `urllib3.exceptions.URLSchemeUnknown: Not supported URL scheme http+docker`, try running `pip install requests=2.31.0` | ||
- If your process fails, you should run `docker-compose down` to stop the container when you shut down your scout instance (`Ctrl+C`) | ||
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### Credit | ||
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- Example images are from the [WAID dataset from Applied Sciences](https://github.com/xiaohuicui/WAID/). |
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## Docker image building | ||
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The `Dockerfile` here can be used to build the scout-with-data image. The command to do so, which should be executed from the | ||
root directory of the repo is: | ||
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``` | ||
docker build -t desired-image-name -f develop-with-data/Dockerfile . | ||
``` |
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version: "3.8" | ||
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services: | ||
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scout: | ||
image: wildme/scout-with-data | ||
stdin_open: true | ||
tty: true | ||
volumes: | ||
- "$PWD/..:/usr/src/app" | ||
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networks: | ||
- intranet | ||
ports: | ||
# development exposure, not exposed in production | ||
- 1337:1337 | ||
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networks: | ||
intranet: | ||
|
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WiredTiger | ||
WiredTiger 3.1.0: (April 23, 2018) |
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WiredTiger lock file |
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Compatibility version | ||
major=3,minor=0 | ||
WiredTiger version string | ||
WiredTiger 3.1.0: (April 23, 2018) | ||
WiredTiger version | ||
major=3,minor=1,patch=0 | ||
file:WiredTiger.wt | ||
access_pattern_hint=none,allocation_size=4KB,app_metadata=,assert=(commit_timestamp=none,read_timestamp=none),block_allocation=best,block_compressor=,cache_resident=false,checkpoint=(WiredTigerCheckpoint.255=(addr="018081e4108bc0518181e49a5740988281e4ecb73751808080e3020fc0e2bfc0",order=255,time=1732061083,size=61440,write_gen=682)),checkpoint_lsn=(16,6362752),checksum=uncompressed,collator=,columns=,dictionary=0,encryption=(keyid=,name=),format=btree,huffman_key=,huffman_value=,id=0,ignore_in_memory_cache_size=false,internal_item_max=0,internal_key_max=0,internal_key_truncate=true,internal_page_max=4KB,key_format=S,key_gap=10,leaf_item_max=0,leaf_key_max=0,leaf_page_max=32KB,leaf_value_max=0,log=(enabled=true),memory_page_max=5MB,os_cache_dirty_max=0,os_cache_max=0,prefix_compression=false,prefix_compression_min=4,split_deepen_min_child=0,split_deepen_per_child=0,split_pct=90,value_format=S,version=(major=1,minor=1) |
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