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Merge branch 'main' of https://github.com/VirtualPlanetaryLaboratory/…
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…vplanet into LandMass
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@RoryBarnes
RoryBarnes committed Sep 25, 2024
2 parents 7c1d868 + 2b2138b commit c9aa846
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28 changes: 15 additions & 13 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,12 @@
GITVERSION := $(shell git describe --tags --abbrev=40 --always)
UNAME_S := $(shell uname -s)
ifeq ($(UNAME_S),Linux)
CC = gcc
GCC_FLAGS1 = -fPIC -Wl,-Bsymbolic-functions -c
GCC_FLAGS2 = -shared -Wl,-Bsymbolic-functions,-soname,vplanetlib.so
endif
ifeq ($(UNAME_S),Darwin)
CC = clang
GCC_FLAGS1 = -fPIC -c
GCC_FLAGS2 = -shared -Wl,-install_name,vplanetlib.so
endif
Expand All @@ -17,7 +19,7 @@ default:
-python setup.py develop

legacy:
-gcc -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
@echo ""
@echo "=========================================================================================================="
@echo 'To add vplanet to your $$PATH, please run the appropriate command for your shell type:'
Expand All @@ -30,13 +32,13 @@ legacy:
@echo "=========================================================================================================="

debug:
-gcc -g -D DEBUG -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -g -D DEBUG -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"

debug_no_AE:
-gcc -g -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -g -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"

opt:
-gcc -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"
@echo ""
@echo "=========================================================================================================="
@echo 'To add vplanet to your $$PATH, please run the appropriate command for your shell type:'
Expand All @@ -52,28 +54,28 @@ cpp:
g++ -o bin/vplanet src/*.c -lm -O3 -fopenmp -fpermissive -w -DGITVERSION=\"$(GITVERSION)\"

warnings:
-gcc -g -D DEBUG -Wunused-but-set-variable -Wunused-variable -Wfloat-equal -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC)-g -D DEBUG -Wunused-but-set-variable -Wunused-variable -Wfloat-equal -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"

parallel:
gcc -o bin/vplanet src/*.c -lm -O3 -fopenmp -DGITVERSION=\"$(GITVERSION)\"
$(CC) -o bin/vplanet src/*.c -lm -O3 -fopenmp -DGITVERSION=\"$(GITVERSION)\"

profile:
-gcc -pg -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -pg -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"

optprof:
-gcc -pg -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -pg -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"

sanitize:
-gcc -g -fsanitize=address -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -g -fsanitize=address -o bin/vplanet src/*.c -lm -DGITVERSION=\"$(GITVERSION)\"

test:
-gcc -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"
-$(CC) -o bin/vplanet src/*.c -lm -O3 -DGITVERSION=\"$(GITVERSION)\"
-pytest --tb=short

coverage:
-rm -f ./gcov/*.gcda ./gcov/*.gcno ./.coverage
-mkdir -p ./gcov
-cd gcov && gcc -coverage -o ./../bin/vplanet ./../src/*.c -lm
-cd gcov && $(CC) -coverage -o ./../bin/vplanet ./../src/*.c -lm
-python -m pytest --tb=short tests --junitxml=./junit/test-results.xml
-lcov --capture --directory ./gcov --output-file ./.coverage
-genhtml ./.coverage --output-directory ./gcov/html
Expand All @@ -82,8 +84,8 @@ docs:
-make -C docs html && echo 'Documentation available at `docs/.build/html/index.html`.'

shared:
-gcc ${GCC_FLAGS1} src/*.c
-gcc ${GCC_FLAGS2} -o bin/vplanetlib.so *.o -lc
-$(CC) ${GCC_FLAGS1} src/*.c
-$(CC) ${GCC_FLAGS2} -o bin/vplanetlib.so *.o -lc

clean:
rm -f bin/vplanet
Expand Down
2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@
</a>
<img src="https://github.com/VirtualPlanetaryLaboratory/vplanet/actions/workflows/pip-install.yml/badge.svg">
<br>
<img src="https://img.shields.io/badge/Unit%20Tests-19,599-darkblue.svg">
<img src="https://img.shields.io/badge/Unit%20Tests-19,667-darkblue.svg">
<img src="https://github.com/VirtualPlanetaryLaboratory/vplanet/actions/workflows/tests-linux.yml/badge.svg">
<img src="https://img.shields.io/badge/Ubuntu%2020-Python%203.6--3.12-7d93c7.svg">
<img src="https://img.shields.io/badge/Ubuntu%2022-Python%203.7--3.12-7d93c7.svg">
Expand Down
99 changes: 59 additions & 40 deletions src/distrot.c
View file
Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,8 @@ void ReadFileOrbitData(BODY *body, CONTROL *control, FILES *files,
void InitializeOptionsDistRot(OPTIONS *options, fnReadOption fnRead[]) {

fvFormattedString(&options[OPT_DYNELLIP].cName, "dDynEllip");
fvFormattedString(&options[OPT_DYNELLIP].cDescr, "Planet's dynamical ellipticity");
fvFormattedString(&options[OPT_DYNELLIP].cDescr,
"Planet's dynamical ellipticity");
fvFormattedString(&options[OPT_DYNELLIP].cDefault, "0.00328");
fvFormattedString(&options[OPT_DYNELLIP].cDimension, "nd");
options[OPT_DYNELLIP].dDefault = 0.00328;
Expand All @@ -171,7 +172,7 @@ void InitializeOptionsDistRot(OPTIONS *options, fnReadOption fnRead[]) {

fvFormattedString(&options[OPT_CALCDYNELLIP].cName, "bCalcDynEllip");
fvFormattedString(&options[OPT_CALCDYNELLIP].cDescr,
"Calculate dynamical ellipticity from RotRate");
"Calculate dynamical ellipticity from RotRate");
fvFormattedString(&options[OPT_CALCDYNELLIP].cDefault, "0");
options[OPT_CALCDYNELLIP].dDefault = 0;
options[OPT_CALCDYNELLIP].iType = 0;
Expand All @@ -193,35 +194,37 @@ void InitializeOptionsDistRot(OPTIONS *options, fnReadOption fnRead[]) {

fvFormattedString(&options[OPT_FORCEPRECRATE].cName, "bForcePrecRate");
fvFormattedString(&options[OPT_FORCEPRECRATE].cDescr,
"Set the axial precession to a fixed rate?");
"Set the axial precession to a fixed rate?");
fvFormattedString(&options[OPT_FORCEPRECRATE].cDefault, "0");
options[OPT_FORCEPRECRATE].dDefault = 0;
options[OPT_FORCEPRECRATE].iType = 0;
options[OPT_FORCEPRECRATE].bMultiFile = 1;
fnRead[OPT_FORCEPRECRATE] = &ReadForcePrecRate;
fvFormattedString(&options[OPT_FORCEPRECRATE].cLongDescr,
"In DisRot, set the axial precession rate to a fixed value. This "
"option \n"
"can mimic the forcing of a natural satellite, or be used for "
"testing.");
fvFormattedString(
&options[OPT_FORCEPRECRATE].cLongDescr,
"In DisRot, set the axial precession rate to a fixed value. This "
"option \n"
"can mimic the forcing of a natural satellite, or be used for "
"testing.");

fvFormattedString(&options[OPT_PRECRATE].cName, "dPrecRate");
fvFormattedString(&options[OPT_PRECRATE].cDescr,
"Fixed rate of axial precession (angle/s)");
"Fixed rate of axial precession (angle/s)");
fvFormattedString(&options[OPT_PRECRATE].cDefault, "7.7261e-12");
fvFormattedString(&options[OPT_PRECRATE].cDimension, "angle/time");
options[OPT_PRECRATE].dDefault = 7.7261e-12;
options[OPT_PRECRATE].iType = 2;
options[OPT_PRECRATE].bMultiFile = 1;
fnRead[OPT_PRECRATE] = &ReadPrecRate;
fvFormattedString(&options[OPT_READORBITDATA].cLongDescr,
"Value of the body's axial precession frequency if %s is set to 1.\n"
"Default value is the modern Earth's value as driven by the Moon.",
options[OPT_FORCEPRECRATE].cName);
fvFormattedString(
&options[OPT_READORBITDATA].cLongDescr,
"Value of the body's axial precession frequency if %s is set to 1.\n"
"Default value is the modern Earth's value as driven by the Moon.",
options[OPT_FORCEPRECRATE].cName);

fvFormattedString(&options[OPT_SPECMOMINERTIA].cName, "dSpecMomInertia");
fvFormattedString(&options[OPT_SPECMOMINERTIA].cDescr,
"Specific moment of inertia of polar axis");
"Specific moment of inertia of polar axis");
fvFormattedString(&options[OPT_SPECMOMINERTIA].cDefault, "0.33");
fvFormattedString(&options[OPT_SPECMOMINERTIA].cDimension, "nd");
options[OPT_SPECMOMINERTIA].dDefault = 0.33;
Expand All @@ -233,7 +236,7 @@ void InitializeOptionsDistRot(OPTIONS *options, fnReadOption fnRead[]) {
// Define OPT_READORBITDATA so it can be used in the long help
fvFormattedString(&options[OPT_READORBITDATA].cName, "bReadOrbitData");
fvFormattedString(&options[OPT_FILEORBITDATA].cDescr,
"Name of file containing orbit time series");
"Name of file containing orbit time series");
fvFormattedString(&options[OPT_FILEORBITDATA].cDefault, "orbit.txt");
options[OPT_FILEORBITDATA].iType = 3;
fnRead[OPT_FILEORBITDATA] = &ReadFileOrbitData;
Expand All @@ -252,18 +255,19 @@ void InitializeOptionsDistRot(OPTIONS *options, fnReadOption fnRead[]) {

// cName defined above
fvFormattedString(&options[OPT_READORBITDATA].cDescr,
"Read in orbital data for use with distrot?");
"Read in orbital data for use with distrot?");
fvFormattedString(&options[OPT_READORBITDATA].cDefault, "0");
options[OPT_READORBITDATA].dDefault = 0;
options[OPT_READORBITDATA].iType = 0;
options[OPT_READORBITDATA].bMultiFile = 1;
fnRead[OPT_READORBITDATA] = &ReadOrbitData;
fvFormattedString(&options[OPT_READORBITDATA].cLongDescr,
"Rather than calculate orbital evolution with DistOrb or SpiNBody, "
"users \n"
"may read in a previously run simulation. See %s for more \n"
"information.",
options[OPT_FILEORBITDATA].cName);
fvFormattedString(
&options[OPT_READORBITDATA].cLongDescr,
"Rather than calculate orbital evolution with DistOrb or SpiNBody, "
"users \n"
"may read in a previously run simulation. See %s for more \n"
"information.",
options[OPT_FILEORBITDATA].cName);
}

void ReadOptionsDistRot(BODY *body, CONTROL *control, FILES *files,
Expand Down Expand Up @@ -1033,7 +1037,7 @@ void WriteOblTimeDistRot(BODY *body, CONTROL *control, OUTPUT *output,
if (dDeriv == 0) {
*dTmp = -1;
} else {
*dTmp = fabs(PI / dDeriv);
*dTmp = fabs(PI / dDeriv);
}

if (output->bDoNeg[iBody]) {
Expand Down Expand Up @@ -1265,7 +1269,7 @@ void WriteZoblTimeDistRot(BODY *body, CONTROL *control, OUTPUT *output,
} else {
*dTmp = fabs(1. / dDeriv);
}

if (output->bDoNeg[iBody]) {
*dTmp *= output->dNeg;
fvFormattedString(cUnit, output->cNeg);
Expand Down Expand Up @@ -1374,6 +1378,7 @@ void WriteBodyCassOne(BODY *body, CONTROL *control, OUTPUT *output,
control->Io.baCassiniOneMessage[iBody] = 1;
}
}
fvFormattedString(cUnit, "");
}

void WriteBodyCassTwo(BODY *body, CONTROL *control, OUTPUT *output,
Expand Down Expand Up @@ -1477,6 +1482,7 @@ void WriteBodyCassTwo(BODY *body, CONTROL *control, OUTPUT *output,
control->Io.baCassiniTwoMessage[iBody] = 1;
}
}
fvFormattedString(cUnit, "");
}

void WriteDynEllip(BODY *body, CONTROL *control, OUTPUT *output, SYSTEM *system,
Expand Down Expand Up @@ -1510,7 +1516,8 @@ void WritePrecFNat(BODY *body, CONTROL *control, OUTPUT *output, SYSTEM *system,
void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {

fvFormattedString(&output[OUT_DOBLDTDISTROT].cName, "DOblDtDistRot");
fvFormattedString(&output[OUT_DOBLDTDISTROT].cDescr, "Body's dobl/dt in DistRot");
fvFormattedString(&output[OUT_DOBLDTDISTROT].cDescr,
"Body's dobl/dt in DistRot");
fvFormattedString(&output[OUT_DOBLDTDISTROT].cNeg, "deg/year");
output[OUT_DOBLDTDISTROT].bNeg = 1;
output[OUT_DOBLDTDISTROT].dNeg = YEARSEC / DEGRAD;
Expand All @@ -1519,7 +1526,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_DOBLDTDISTROT] = &WriteBodyDOblDtDistRot;

fvFormattedString(&output[OUT_DPRECADTDISTROT].cName, "DPrecADtDistRot");
fvFormattedString(&output[OUT_DPRECADTDISTROT].cDescr, "Body's dpA/dt in DistRot");
fvFormattedString(&output[OUT_DPRECADTDISTROT].cDescr,
"Body's dpA/dt in DistRot");
fvFormattedString(&output[OUT_DPRECADTDISTROT].cNeg, "deg/year");
output[OUT_DPRECADTDISTROT].bNeg = 1;
output[OUT_DPRECADTDISTROT].dNeg = YEARSEC / DEGRAD;
Expand All @@ -1528,7 +1536,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_DPRECADTDISTROT] = &WriteBodyDPrecADtDistRot;

fvFormattedString(&output[OUT_DXOBLDTDISTROT].cName, "DXoblDtDistRot");
fvFormattedString(&output[OUT_DXOBLDTDISTROT].cDescr, "Body's dXobl/dt in DistRot");
fvFormattedString(&output[OUT_DXOBLDTDISTROT].cDescr,
"Body's dXobl/dt in DistRot");
fvFormattedString(&output[OUT_DXOBLDTDISTROT].cNeg, "1/year");
output[OUT_DXOBLDTDISTROT].bNeg = 1;
output[OUT_DXOBLDTDISTROT].dNeg = YEARSEC;
Expand All @@ -1537,7 +1546,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_DXOBLDTDISTROT] = &WriteBodyDXoblDtDistRot;

fvFormattedString(&output[OUT_DYOBLDTDISTROT].cName, "DYoblDtDistRot");
fvFormattedString(&output[OUT_DYOBLDTDISTROT].cDescr, "Body's dYobl/dt in DistRot");
fvFormattedString(&output[OUT_DYOBLDTDISTROT].cDescr,
"Body's dYobl/dt in DistRot");
fvFormattedString(&output[OUT_DYOBLDTDISTROT].cNeg, "1/year");
output[OUT_DYOBLDTDISTROT].bNeg = 1;
output[OUT_DYOBLDTDISTROT].dNeg = YEARSEC;
Expand All @@ -1546,7 +1556,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_DYOBLDTDISTROT] = &WriteBodyDYoblDtDistRot;

fvFormattedString(&output[OUT_DZOBLDTDISTROT].cName, "DZoblDtDistRot");
fvFormattedString(&output[OUT_DZOBLDTDISTROT].cDescr, "Body's dZobl/dt in DistRot");
fvFormattedString(&output[OUT_DZOBLDTDISTROT].cDescr,
"Body's dZobl/dt in DistRot");
fvFormattedString(&output[OUT_DZOBLDTDISTROT].cNeg, "1/year");
output[OUT_DZOBLDTDISTROT].bNeg = 1;
output[OUT_DZOBLDTDISTROT].dNeg = YEARSEC;
Expand All @@ -1555,7 +1566,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_DZOBLDTDISTROT] = &WriteBodyDZoblDtDistRot;

fvFormattedString(&output[OUT_XOBLTIMEDISTROT].cName, "XoblTimeDistRot");
fvFormattedString(&output[OUT_XOBLTIMEDISTROT].cDescr, "Xobl timescale in DistRot");
fvFormattedString(&output[OUT_XOBLTIMEDISTROT].cDescr,
"Xobl timescale in DistRot");
fvFormattedString(&output[OUT_XOBLTIMEDISTROT].cNeg, "year");
output[OUT_XOBLTIMEDISTROT].bNeg = 1;
output[OUT_XOBLTIMEDISTROT].dNeg = 1. / YEARSEC;
Expand All @@ -1564,7 +1576,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_XOBLTIMEDISTROT] = &WriteXoblTimeDistRot;

fvFormattedString(&output[OUT_YOBLTIMEDISTROT].cName, "YoblTimeDistRot");
fvFormattedString(&output[OUT_YOBLTIMEDISTROT].cDescr, "Yobl timescale in DistRot");
fvFormattedString(&output[OUT_YOBLTIMEDISTROT].cDescr,
"Yobl timescale in DistRot");
fvFormattedString(&output[OUT_YOBLTIMEDISTROT].cNeg, "year");
output[OUT_YOBLTIMEDISTROT].bNeg = 1;
output[OUT_YOBLTIMEDISTROT].dNeg = 1. / YEARSEC;
Expand All @@ -1573,7 +1586,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_YOBLTIMEDISTROT] = &WriteYoblTimeDistRot;

fvFormattedString(&output[OUT_ZOBLTIMEDISTROT].cName, "ZoblTimeDistRot");
fvFormattedString(&output[OUT_ZOBLTIMEDISTROT].cDescr, "Zobl timescale in DistRot");
fvFormattedString(&output[OUT_ZOBLTIMEDISTROT].cDescr,
"Zobl timescale in DistRot");
fvFormattedString(&output[OUT_ZOBLTIMEDISTROT].cNeg, "year");
output[OUT_ZOBLTIMEDISTROT].bNeg = 1;
output[OUT_ZOBLTIMEDISTROT].dNeg = 1. / YEARSEC;
Expand All @@ -1582,7 +1596,8 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_ZOBLTIMEDISTROT] = &WriteZoblTimeDistRot;

fvFormattedString(&output[OUT_OBLTIMEDISTROT].cName, "OblTimeDistRot");
fvFormattedString(&output[OUT_OBLTIMEDISTROT].cDescr, "Obliquity timescale in DistRot");
fvFormattedString(&output[OUT_OBLTIMEDISTROT].cDescr,
"Obliquity timescale in DistRot");
fvFormattedString(&output[OUT_OBLTIMEDISTROT].cNeg, "year");
output[OUT_OBLTIMEDISTROT].bNeg = 1;
output[OUT_OBLTIMEDISTROT].dNeg = 1. / YEARSEC;
Expand All @@ -1592,7 +1607,7 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {

fvFormattedString(&output[OUT_PRECATIMEDISTROT].cName, "PrecATimeDistRot");
fvFormattedString(&output[OUT_PRECATIMEDISTROT].cDescr,
"Axial precession timescale in DistRot");
"Axial precession timescale in DistRot");
fvFormattedString(&output[OUT_PRECATIMEDISTROT].cNeg, "year");
output[OUT_PRECATIMEDISTROT].bNeg = 1;
output[OUT_PRECATIMEDISTROT].dNeg = 1. / YEARSEC;
Expand All @@ -1601,30 +1616,34 @@ void InitializeOutputDistRot(OUTPUT *output, fnWriteOutput fnWrite[]) {
fnWrite[OUT_PRECATIMEDISTROT] = &WritePrecATimeDistRot;

fvFormattedString(&output[OUT_CASS1].cName, "CassiniOne");
fvFormattedString(&output[OUT_CASS1].cDescr,
"First Cassini parameter (misalignment of Cassini state vectors)");
fvFormattedString(
&output[OUT_CASS1].cDescr,
"First Cassini parameter (misalignment of Cassini state vectors)");
output[OUT_CASS1].bNeg = 0;
output[OUT_CASS1].iNum = 1;
output[OUT_CASS1].iModuleBit = DISTROT;
fnWrite[OUT_CASS1] = &WriteBodyCassOne;

fvFormattedString(&output[OUT_CASS2].cName, "CassiniTwo");
fvFormattedString(&output[OUT_CASS2].cDescr,
"Second Cassini parameter (alignment of Cassini state vectors");
fvFormattedString(
&output[OUT_CASS2].cDescr,
"Second Cassini parameter (alignment of Cassini state vectors");
output[OUT_CASS2].bNeg = 0;
output[OUT_CASS2].iNum = 1;
output[OUT_CASS2].iModuleBit = DISTROT;
fnWrite[OUT_CASS2] = &WriteBodyCassTwo;

fvFormattedString(&output[OUT_DYNELLIP].cName, "DynEllip");
fvFormattedString(&output[OUT_DYNELLIP].cDescr, "dynamical ellipticity of planet");
fvFormattedString(&output[OUT_DYNELLIP].cDescr,
"dynamical ellipticity of planet");
output[OUT_DYNELLIP].bNeg = 0;
output[OUT_DYNELLIP].iNum = 1;
output[OUT_DYNELLIP].iModuleBit = DISTROT;
fnWrite[OUT_DYNELLIP] = &WriteDynEllip;

fvFormattedString(&output[OUT_PRECFNAT].cName, "PrecFNat");
fvFormattedString(&output[OUT_PRECFNAT].cDescr, "natural precession freq of planet");
fvFormattedString(&output[OUT_PRECFNAT].cDescr,
"natural precession freq of planet");
output[OUT_PRECFNAT].bNeg = 0;
output[OUT_PRECFNAT].iNum = 1;
output[OUT_PRECFNAT].iModuleBit = DISTROT;
Expand Down
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