removing any passed double quotes

problem issue: UPDATE feature_expression SET hemidriver = "FBtp0121686" WHERE tg = "FBtp0118626" AND comment = "when combined with @FBtp0121686:P{R39H12-GAL4.DBD}@ (combination referred to as '"T4/T5a,d-splitGal4"')"
VirtualFlyBrain · Dec 9, 2023 · d478cba · d478cba
1 parent 07f62e8
commit d478cba
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/uk/ac/ebi/vfb/neo4j/flybase2neo/expression_runner.py b/src/uk/ac/ebi/vfb/neo4j/flybase2neo/expression_runner.py
@@ -128,8 +128,8 @@ def proc_splits(eng):
                 m2 = re.match('.*{.*(DBD|AD).*}', m.group(2))
                 # If it is a split:
                 if m2:
-                    hemidriver_id = m.group(1)
-                    hemidriver_type = m2.group(1)
+                    hemidriver_id = m.group(1).replace('"', '')
+                    hemidriver_type = m2.group(1).replace('"', '')
                     # link hemidriver to feature_expression table in temp DB
                     eng.execute('UPDATE feature_expression SET hemidriver = "%s" '
                                 'WHERE tg = "%s" '