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DOC: Update README
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Vini2 committed Sep 14, 2023
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Expand Up @@ -110,7 +110,7 @@ Please refer to the [**documentation hosted at Read the Docs**](https://phables.

## Issues and Questions

Phables is still under testing. If you want to test (or break) Phables give it a try and report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).
If you want to test (or break) Phables give it a try and report any issues and suggestions under [Phables Issues](https://github.com/Vini2/phables/issues).

If you come across any questions, please have a look at the [Phables FAQ page](https://phables.readthedocs.io/en/latest/faq/). If your question is not here, feel free to post it under [Phables Issues](https://github.com/Vini2/phables/issues).

Expand All @@ -125,7 +125,7 @@ Are you interested in contributing to the Phables project? If so, you can check
Phables uses the [Gurobi](https://www.gurobi.com/) implementation of [MFD-ILP](https://github.com/algbio/MFD-ILP) and code snippets from [STRONG](https://github.com/chrisquince/STRONG), [METAMVGL](https://github.com/ZhangZhenmiao/METAMVGL), [GraphBin](https://github.com/metagentools/GraphBin), [MetaCoAG](https://github.com/metagentools/MetaCoAG) and [Hecatomb](https://hecatomb.readthedocs.io/en/latest/). Special thanks are owed to [Ryan Wick](https://github.com/rrwick) for developing [Bandage](https://rrwick.github.io/Bandage/) to visualise assembly graphs, which I heavily rely upon to investigate, develop and optimise my methods. The Phables logo was designed by [Amber Skye](https://fame.flinders.edu.au/people/2021/01/01/amber-cook).

## Citation
The Phables manuscript is currently under review and the preprint is available on biorxiv at DOI: [10.1101/2023.04.04.535632](https://www.biorxiv.org/content/10.1101/2023.04.04.535632v1).
Phables is currently accepted at [Bioinformatics](https://academic.oup.com/bioinformatics) and the preprint is available on biorxiv at DOI: [10.1101/2023.04.04.535632](https://www.biorxiv.org/content/10.1101/2023.04.04.535632v1).

If you use Phables in your work, please cite Phables as,

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