DOC: Updated assembly documentation #38 #321

	name: CI

	on:
	push:
	branches: [ develop ]
	pull_request:
	branches: [ develop ]


	jobs:
	tests:
	name: "Python ${{ matrix.python-version }}"
	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -el {0}

	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ["3.9", "3.10", "3.11", "3.12"]

	steps:
	- uses: "actions/checkout@v3"
	with:
	fetch-depth: 0

	# Setup env
	- uses: conda-incubator/setup-miniconda@v3
	with:
	activate-environment: phables
	environment-file: build/environment.yml
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false

	- name: "Setup Phables on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	python -m pip install --upgrade pip
	pip install .

	- name: "Generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	pip install pytest pytest-cov
	pytest --cov=./ --cov-report xml --cov-report lcov --cov-append

	- name: Coveralls Parallel
	uses: coverallsapp/github-action@master
	with:
	parallel: true
	github-token: ${{ secrets.github_token }}
	flag-name: run-${{ matrix.test_number }}
	path-to-lcov: "coverage.lcov"

	finish:
	needs: tests
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ["3.9", "3.10", "3.11", "3.12"]
	steps:
	- name: Coveralls Finished
	uses: coverallsapp/github-action@master
	with:
	github-token: ${{ secrets.github_token }}
	parallel-finished: true

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