Merge pull request #38 from VemundFredriksen/dependabot/pip/demo/grad… #107
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name: Build | |
on: | |
push: | |
branches: | |
- '*' | |
pull_request: | |
branches: | |
- '*' | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: ubuntu-20.04 | |
steps: | |
- uses: actions/checkout@v1 | |
- name: Set up Python 3.7 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.7 | |
- name: Install dependencies | |
run: | | |
pip install --upgrade pip | |
pip install wheel setuptools | |
- name: Build wheel | |
run: python setup.py bdist_wheel --universal | |
- name: Upload Python wheel | |
uses: actions/upload-artifact@v2 | |
with: | |
name: Python wheel | |
path: ${{github.workspace}}/dist/lungtumormask-*.whl | |
if-no-files-found: error | |
test: | |
needs: build | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [windows-2019, ubuntu-20.04, macos-11] | |
python-version: ["3.7", "3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v1 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Download artifact | |
uses: actions/download-artifact@master | |
with: | |
name: "Python wheel" | |
- name: Install software | |
run: pip install -U --find-links=${{github.workspace}} lungtumormask | |
- name: Download test data | |
run: | | |
pip install --upgrade --no-cache-dir wget | |
mkdir samples | |
cd samples | |
python -m wget https://github.com/VemundFredriksen/LungTumorMask/releases/download/0.0.1/lung_001.nii.gz | |
- name: Test CLI | |
run: lungtumormask --help | |
- name: Test inference | |
run: lungtumormask samples/lung_001.nii.gz mask_001.nii.gz --threshold 0.3 --lung-filter --radius 3 --batch-size 8 |