Skip to content

Commit

Permalink
deploy: 728abb1
Browse files Browse the repository at this point in the history
  • Loading branch information
amrit110 committed Nov 20, 2024
1 parent c6e8248 commit debe07a
Show file tree
Hide file tree
Showing 9 changed files with 197 additions and 239 deletions.
2 changes: 1 addition & 1 deletion searchindex.js

Large diffs are not rendered by default.

18 changes: 9 additions & 9 deletions tutorials/eicu.html
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:49,450 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-11-20 05:43:00,894 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -679,15 +679,15 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:50,408 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:01,944 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:50,410 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.203213 s
2024-11-20 05:43:01,946 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.285067 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -722,15 +722,15 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:52,697 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:06,716 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:52,699 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2.256952 s
2024-11-20 05:43:06,718 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.741402 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -771,15 +771,15 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:53,885 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:07,270 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:53,887 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.146802 s
2024-11-20 05:43:07,272 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.506820 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -818,15 +818,15 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:55,228 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:09,861 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:34:55,230 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.303408 s
2024-11-20 05:43:09,863 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2.551167 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
58 changes: 29 additions & 29 deletions tutorials/eicu.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-20T05:34:47.408959Z",
"iopub.status.busy": "2024-11-20T05:34:47.407985Z",
"iopub.status.idle": "2024-11-20T05:34:50.186107Z",
"shell.execute_reply": "2024-11-20T05:34:50.184172Z"
"iopub.execute_input": "2024-11-20T10:42:58.841327Z",
"iopub.status.busy": "2024-11-20T10:42:58.840218Z",
"iopub.status.idle": "2024-11-20T10:43:01.637862Z",
"shell.execute_reply": "2024-11-20T10:43:01.635883Z"
},
"tags": []
},
Expand All @@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:49,450 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
"2024-11-20 05:43:00,894 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
Expand Down Expand Up @@ -124,10 +124,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-20T05:34:50.194038Z",
"iopub.status.busy": "2024-11-20T05:34:50.192776Z",
"iopub.status.idle": "2024-11-20T05:34:50.418150Z",
"shell.execute_reply": "2024-11-20T05:34:50.416241Z"
"iopub.execute_input": "2024-11-20T10:43:01.646726Z",
"iopub.status.busy": "2024-11-20T10:43:01.645226Z",
"iopub.status.idle": "2024-11-20T10:43:01.953244Z",
"shell.execute_reply": "2024-11-20T10:43:01.951531Z"
},
"tags": []
},
Expand All @@ -136,14 +136,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:50,408 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-20 05:43:01,944 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:50,410 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.203213 s\n"
"2024-11-20 05:43:01,946 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.285067 s\n"
]
},
{
Expand Down Expand Up @@ -180,10 +180,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-20T05:34:50.425440Z",
"iopub.status.busy": "2024-11-20T05:34:50.424534Z",
"iopub.status.idle": "2024-11-20T05:34:52.706118Z",
"shell.execute_reply": "2024-11-20T05:34:52.704480Z"
"iopub.execute_input": "2024-11-20T10:43:01.960848Z",
"iopub.status.busy": "2024-11-20T10:43:01.959623Z",
"iopub.status.idle": "2024-11-20T10:43:06.726419Z",
"shell.execute_reply": "2024-11-20T10:43:06.724613Z"
},
"tags": []
},
Expand All @@ -192,14 +192,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:52,697 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-20 05:43:06,716 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:52,699 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.256952 s\n"
"2024-11-20 05:43:06,718 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.741402 s\n"
]
},
{
Expand Down Expand Up @@ -236,10 +236,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-20T05:34:52.713618Z",
"iopub.status.busy": "2024-11-20T05:34:52.712403Z",
"iopub.status.idle": "2024-11-20T05:34:53.894862Z",
"shell.execute_reply": "2024-11-20T05:34:53.892958Z"
"iopub.execute_input": "2024-11-20T10:43:06.734799Z",
"iopub.status.busy": "2024-11-20T10:43:06.733077Z",
"iopub.status.idle": "2024-11-20T10:43:07.279272Z",
"shell.execute_reply": "2024-11-20T10:43:07.277533Z"
},
"tags": []
},
Expand All @@ -248,14 +248,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:53,885 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-20 05:43:07,270 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:53,887 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.146802 s\n"
"2024-11-20 05:43:07,272 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.506820 s\n"
]
},
{
Expand Down Expand Up @@ -298,10 +298,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-20T05:34:53.903171Z",
"iopub.status.busy": "2024-11-20T05:34:53.901436Z",
"iopub.status.idle": "2024-11-20T05:34:55.238566Z",
"shell.execute_reply": "2024-11-20T05:34:55.236622Z"
"iopub.execute_input": "2024-11-20T10:43:07.287633Z",
"iopub.status.busy": "2024-11-20T10:43:07.285996Z",
"iopub.status.idle": "2024-11-20T10:43:09.871035Z",
"shell.execute_reply": "2024-11-20T10:43:09.869071Z"
},
"tags": []
},
Expand All @@ -310,14 +310,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:55,228 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-20 05:43:09,861 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-20 00:34:55,230 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.303408 s\n"
"2024-11-20 05:43:09,863 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.551167 s\n"
]
},
{
Expand Down
18 changes: 9 additions & 9 deletions tutorials/mimiciii.html
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:08,458 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-11-20 05:43:22,707 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -649,15 +649,15 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:14,769 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:29,122 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:14,770 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.242612 s
2024-11-20 05:43:29,124 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.371992 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -697,15 +697,15 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:21,001 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:39,240 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:21,003 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 6.181985 s
2024-11-20 05:43:39,242 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 10.067851 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -737,15 +737,15 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:21,365 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 05:43:39,628 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 00:35:21,367 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.315991 s
2024-11-20 05:43:39,630 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.337543 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -782,15 +782,15 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 01:16:35,253 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-20 06:17:57,933 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-20 01:16:35,255 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2473.821842 s
2024-11-20 06:17:57,937 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 2058.240027 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
Loading

0 comments on commit debe07a

Please sign in to comment.