Skip to content

Commit

Permalink
deploy: 8755a7b
Browse files Browse the repository at this point in the history
  • Loading branch information
@amrit110
amrit110 committed Nov 19, 2024
1 parent 2c0f038 commit 11311d8
Show file tree
Hide file tree
Showing 9 changed files with 311 additions and 203 deletions.
2 changes: 1 addition & 1 deletion searchindex.js
View file

Large diffs are not rendered by default.

18 changes: 9 additions & 9 deletions tutorials/eicu.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:52,586 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-11-19 16:27:22,140 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -679,15 +679,15 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:54,052 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:27:23,581 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:54,054 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.811666 s
2024-11-19 16:27:23,583 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.635138 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -722,15 +722,15 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:58,915 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:27:26,737 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:58,918 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.833422 s
2024-11-19 16:27:26,739 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.124447 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -771,15 +771,15 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:59,552 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:27:27,431 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:30:59,554 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.591667 s
2024-11-19 16:27:27,433 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.647006 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -818,15 +818,15 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:00,852 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:27:38,559 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:00,855 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.260199 s
2024-11-19 16:27:38,561 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 11.087972 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
58 changes: 29 additions & 29 deletions tutorials/eicu.ipynb
View file
Original file line number Diff line number Diff line change
Expand Up @@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-18T18:30:47.656852Z",
"iopub.status.busy": "2024-11-18T18:30:47.655825Z",
"iopub.status.idle": "2024-11-18T18:30:53.223562Z",
"shell.execute_reply": "2024-11-18T18:30:53.221878Z"
"iopub.execute_input": "2024-11-19T21:27:20.045792Z",
"iopub.status.busy": "2024-11-19T21:27:20.044704Z",
"iopub.status.idle": "2024-11-19T21:27:22.924137Z",
"shell.execute_reply": "2024-11-19T21:27:22.922013Z"
},
"tags": []
},
Expand All @@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:52,586 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
"2024-11-19 16:27:22,140 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
Expand Down Expand Up @@ -124,10 +124,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-18T18:30:53.231357Z",
"iopub.status.busy": "2024-11-18T18:30:53.230060Z",
"iopub.status.idle": "2024-11-18T18:30:54.061622Z",
"shell.execute_reply": "2024-11-18T18:30:54.059943Z"
"iopub.execute_input": "2024-11-19T21:27:22.932935Z",
"iopub.status.busy": "2024-11-19T21:27:22.930951Z",
"iopub.status.idle": "2024-11-19T21:27:23.590563Z",
"shell.execute_reply": "2024-11-19T21:27:23.588839Z"
},
"tags": []
},
Expand All @@ -136,14 +136,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:54,052 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-19 16:27:23,581 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:54,054 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.811666 s\n"
"2024-11-19 16:27:23,583 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.635138 s\n"
]
},
{
Expand Down Expand Up @@ -180,10 +180,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-18T18:30:54.069200Z",
"iopub.status.busy": "2024-11-18T18:30:54.067912Z",
"iopub.status.idle": "2024-11-18T18:30:58.925263Z",
"shell.execute_reply": "2024-11-18T18:30:58.923350Z"
"iopub.execute_input": "2024-11-19T21:27:23.598923Z",
"iopub.status.busy": "2024-11-19T21:27:23.597447Z",
"iopub.status.idle": "2024-11-19T21:27:26.747498Z",
"shell.execute_reply": "2024-11-19T21:27:26.745592Z"
},
"tags": []
},
Expand All @@ -192,14 +192,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:58,915 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-19 16:27:26,737 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:58,918 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.833422 s\n"
"2024-11-19 16:27:26,739 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.124447 s\n"
]
},
{
Expand Down Expand Up @@ -236,10 +236,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-18T18:30:58.932972Z",
"iopub.status.busy": "2024-11-18T18:30:58.931874Z",
"iopub.status.idle": "2024-11-18T18:30:59.561355Z",
"shell.execute_reply": "2024-11-18T18:30:59.559701Z"
"iopub.execute_input": "2024-11-19T21:27:26.755549Z",
"iopub.status.busy": "2024-11-19T21:27:26.753978Z",
"iopub.status.idle": "2024-11-19T21:27:27.441371Z",
"shell.execute_reply": "2024-11-19T21:27:27.439489Z"
},
"tags": []
},
Expand All @@ -248,14 +248,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:59,552 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-19 16:27:27,431 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:30:59,554 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.591667 s\n"
"2024-11-19 16:27:27,433 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.647006 s\n"
]
},
{
Expand Down Expand Up @@ -298,10 +298,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
"iopub.execute_input": "2024-11-18T18:30:59.568871Z",
"iopub.status.busy": "2024-11-18T18:30:59.567673Z",
"iopub.status.idle": "2024-11-18T18:31:00.862715Z",
"shell.execute_reply": "2024-11-18T18:31:00.860731Z"
"iopub.execute_input": "2024-11-19T21:27:27.449461Z",
"iopub.status.busy": "2024-11-19T21:27:27.447852Z",
"iopub.status.idle": "2024-11-19T21:27:38.568811Z",
"shell.execute_reply": "2024-11-19T21:27:38.567104Z"
},
"tags": []
},
Expand All @@ -310,14 +310,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:31:00,852 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-11-19 16:27:38,559 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-11-18 13:31:00,855 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.260199 s\n"
"2024-11-19 16:27:38,561 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 11.087972 s\n"
]
},
{
Expand Down
18 changes: 9 additions & 9 deletions tutorials/mimiciii.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:15,893 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-11-19 16:27:56,507 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -649,15 +649,15 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:22,132 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:28:02,786 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:22,134 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.221651 s
2024-11-19 16:28:02,788 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.239818 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -697,15 +697,15 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:26,929 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:28:11,319 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:26,931 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.744756 s
2024-11-19 16:28:11,321 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 8.481656 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -737,15 +737,15 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:27,413 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:28:11,710 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:31:27,415 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.431917 s
2024-11-19 16:28:11,712 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.339731 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -782,15 +782,15 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:56:33,762 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-11-19 16:57:42,520 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-11-18 13:56:33,765 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1506.287530 s
2024-11-19 16:57:42,523 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1770.755225 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
Loading

0 comments on commit 11311d8

Please sign in to comment.