Bump to 0.1.3 with small addition to mimiciv querier #27
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: integration tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - .github/workflows/docs_build.yml | |
| - .github/workflows/docs_deploy.yml | |
| - .github/workflows/integration_tests.yml | |
| - '**.py' | |
| - '**.ipynb' | |
| - poetry.lock | |
| - pyproject.toml | |
| - '**.rst' | |
| - '**.md' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - .pre-commit-config.yaml | |
| - .github/workflows/code_checks.yml | |
| - .github/workflows/docs_build.yml | |
| - .github/workflows/docs_deploy.yml | |
| - .github/workflows/integration_tests.yml | |
| - '**.py' | |
| - '**.ipynb' | |
| - poetry.lock | |
| - pyproject.toml | |
| - '**.rst' | |
| - '**.md' | |
| jobs: | |
| integration-tests: | |
| runs-on: [self-hosted, db] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install poetry | |
| run: pip install poetry | |
| - uses: actions/[email protected] | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies and check code | |
| run: | | |
| poetry env use '3.10' | |
| source $(poetry env info --path)/bin/activate | |
| poetry install --with test | |
| coverage run -m pytest -m integration_test && coverage xml && coverage report -m | |
| - name: Upload coverage to Codecov | |
| uses: Wandalen/[email protected] | |
| with: | |
| action: codecov/[email protected] | |
| with: | | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| attempt_limit: 5 | |
| attempt_delay: 30000 |